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SRR1747057_scaffold_1_prodigal-single.1__X__X__00256
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00256
Identity
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-87
Domain cluster:
rep: MH853356.2__AYJ74955.1__X__00026__D367-446
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08239.18 best | SH3_3 | 39.6 | 6.60e-10 | 87.7% | 94.4% |
CATH (57)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8b2gA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.92 | 78.0 | 7.72e-01 | 89.5% | 100.0% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.89 | 82.0 | 6.70e-01 | 100.0% | 77.8% |
| 4krtB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.89 | 82.0 | 7.75e-01 | 100.0% | 98.5% |
| 6bioA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.88 | 77.0 | 7.78e-01 | 94.7% | 100.0% |
| 2krsA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.88 | 78.0 | 7.67e-01 | 96.5% | 100.0% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.87 | 80.0 | 7.62e-01 | 100.0% | 90.9% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.86 | 78.0 | 7.27e-01 | 100.0% | 88.6% |
| 3pe0A03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.82 | 66.0 | 6.31e-01 | 100.0% | 76.6% |
| 1xovA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.81 | 71.0 | 6.76e-01 | 98.2% | 89.4% |
| 1ov3A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.80 | 70.0 | 7.18e-01 | 100.0% | 98.2% |
| 2evrA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.79 | 70.0 | 6.44e-01 | 100.0% | 86.5% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.78 | 67.0 | 6.79e-01 | 100.0% | 93.0% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 69.0 | 6.50e-01 | 100.0% | 88.2% |
| 2ekhA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 65.0 | 5.81e-01 | 100.0% | 67.5% |
| 1ng2A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 51.0 | 5.68e-01 | 80.7% | 90.9% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 66.0 | 6.20e-01 | 100.0% | 79.4% |
| 6vlfA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 68.0 | 6.80e-01 | 100.0% | 96.6% |
| 2epdA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 65.0 | 5.87e-01 | 100.0% | 71.1% |
| 2pqhB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 65.0 | 6.22e-01 | 100.0% | 83.1% |
| 1zuyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 69.0 | 6.91e-01 | 100.0% | 98.3% |
| 5o99A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 64.0 | 6.32e-01 | 100.0% | 90.0% |
| 1gcqB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.74 | 65.0 | 6.55e-01 | 100.0% | 94.7% |
| 3nmzD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.74 | 65.0 | 5.63e-01 | 100.0% | 64.3% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.74 | 68.0 | 6.53e-01 | 100.0% | 92.2% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.73 | 66.0 | 6.55e-01 | 100.0% | 94.9% |
| 2fpeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.73 | 66.0 | 6.40e-01 | 100.0% | 90.3% |
| 1wfwA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.73 | 65.0 | 5.99e-01 | 100.0% | 81.1% |
| 4fssB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.73 | 66.0 | 6.45e-01 | 100.0% | 93.4% |
| 6ghmC02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 66.0 | 6.32e-01 | 100.0% | 89.1% |
| 6uzjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 64.0 | 6.20e-01 | 100.0% | 88.9% |
| 3i35A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 65.0 | 6.52e-01 | 100.0% | 98.2% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 66.0 | 5.96e-01 | 100.0% | 76.0% |
| 6uy8A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 61.0 | 6.11e-01 | 100.0% | 91.5% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 66.0 | 6.24e-01 | 100.0% | 89.4% |
| 4wsiA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 60.0 | 5.75e-01 | 93.0% | 95.5% |
| 2kymA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 65.0 | 5.45e-01 | 100.0% | 61.3% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 64.0 | 6.34e-01 | 100.0% | 95.0% |
| 2vgeA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.71 | 64.0 | 4.31e-01 | 100.0% | 27.5% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 53.0 | 5.12e-01 | 100.0% | 73.0% |
| 2i0nA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 61.0 | 6.18e-01 | 100.0% | 96.5% |
| 2rqtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 63.0 | 6.18e-01 | 100.0% | 93.4% |
| 2ke9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 63.0 | 5.94e-01 | 100.0% | 91.0% |
| 2eczA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 60.0 | 5.64e-01 | 100.0% | 80.0% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 61.0 | 6.03e-01 | 100.0% | 95.0% |
| 1k1zA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 58.0 | 5.27e-01 | 100.0% | 80.8% |
| 2ckkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 53.0 | 5.44e-01 | 100.0% | 94.3% |
| 3cp0A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 47.0 | 4.63e-01 | 80.7% | 87.3% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 46.0 | 4.32e-01 | 100.0% | 72.9% |
| 2eyzA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 44.0 | 3.91e-01 | 87.7% | 54.9% |
| 3of1A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 48.0 | 3.71e-01 | 100.0% | 40.6% |
| 2xhkB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 49.0 | 3.87e-01 | 100.0% | 48.8% |
| 2k3aA01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.56 | 47.0 | 3.95e-01 | 100.0% | 54.0% |
| 3dv8A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 47.0 | 3.63e-01 | 100.0% | 43.2% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 44.0 | 3.53e-01 | 100.0% | 47.5% |
| 3twlA01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.51 | 43.0 | 3.47e-01 | 100.0% | 61.4% |
| 4yarA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 42.0 | 3.31e-01 | 94.7% | 48.8% |
| 3ng0A02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.50 | 40.0 | 2.52e-01 | 91.2% | 68.8% |
ECOD (96)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4127826 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.96 | 92.0 | 8.72e-01 | 100.0% | 95.4% |
| 3840076 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.95 | 88.0 | 8.68e-01 | 98.2% | 100.0% |
| 4013287 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.93 | 80.0 | 7.90e-01 | 91.2% | 100.0% |
| 4038705 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.93 | 87.0 | 8.29e-01 | 100.0% | 95.4% |
| 4550532 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.93 | 87.0 | 7.29e-01 | 100.0% | 68.9% |
| 3289848 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.93 | 85.0 | 7.63e-01 | 98.2% | 97.3% |
| 3700747 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.92 | 86.0 | 7.21e-01 | 100.0% | 86.7% |
| 4032300 | 4.1.1.59 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_5 | 0.92 | 86.0 | 7.20e-01 | 100.0% | 85.6% |
| 4537356 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.92 | 82.0 | 8.07e-01 | 94.7% | 98.3% |
| 4358722 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.91 | 86.0 | 6.79e-01 | 100.0% | 58.1% |
| 3579483 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.91 | 83.0 | 7.14e-01 | 98.2% | 98.8% |
| 1905739 | 4.1.1.59 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_5 | 0.91 | 84.0 | 7.22e-01 | 100.0% | 89.5% |
| 4207556 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.91 | 85.0 | 7.83e-01 | 100.0% | 95.7% |
| 3988893 | 4.1.1.59 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_5 | 0.91 | 81.0 | 7.25e-01 | 94.7% | 81.3% |
| 4031670 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.91 | 82.0 | 8.11e-01 | 96.5% | 98.3% |
| 3715828 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.91 | 84.0 | 7.39e-01 | 100.0% | 90.0% |
| 3204891 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.91 | 84.0 | 7.56e-01 | 100.0% | 97.3% |
| 4196229 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.91 | 84.0 | 7.79e-01 | 100.0% | 87.1% |
| 4091533 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.91 | 83.0 | 7.74e-01 | 100.0% | 91.4% |
| 4303967 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.90 | 84.0 | 7.07e-01 | 100.0% | 88.9% |
| 4602101 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.90 | 84.0 | 8.03e-01 | 100.0% | 92.3% |
| 4520767 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.90 | 83.0 | 7.64e-01 | 98.2% | 87.1% |
| 4084890 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.90 | 83.0 | 7.90e-01 | 98.2% | 100.0% |
| 4340107 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.90 | 84.0 | 7.54e-01 | 100.0% | 94.7% |
| 4427420 | 4.1.1.436 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29249 | 0.89 | 82.0 | 7.24e-01 | 100.0% | 80.0% |
| 4291404 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.89 | 82.0 | 7.38e-01 | 100.0% | 88.0% |
| 4091791 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.89 | 82.0 | 7.34e-01 | 98.2% | 85.3% |
| 137947 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.89 | 81.0 | 7.68e-01 | 100.0% | 92.5% |
| 4386715 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.89 | 82.0 | 7.05e-01 | 100.0% | 87.1% |
| 2410170 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.89 | 81.0 | 7.88e-01 | 100.0% | 95.2% |
| 5063003 | 4.1.1.120 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_16 | 0.89 | 80.0 | 7.40e-01 | 96.5% | 94.3% |
| 4009391 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.88 | 79.0 | 7.01e-01 | 98.2% | 78.8% |
| 5063004 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.88 | 82.0 | 7.80e-01 | 100.0% | 92.3% |
| 3707023 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.87 | 80.0 | 6.50e-01 | 100.0% | 76.0% |
| 1263586 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.87 | 78.0 | 7.24e-01 | 100.0% | 86.1% |
| 1673571 | 4.1.1.120 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_16 | 0.87 | 80.0 | 7.16e-01 | 100.0% | 80.3% |
| 4650162 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 78.0 | 7.51e-01 | 100.0% | 92.3% |
| 1263580 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.86 | 77.0 | 7.05e-01 | 100.0% | 82.7% |
| 3385856 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.85 | 77.0 | 7.45e-01 | 100.0% | 95.2% |
| 4446467 | 4.1.1.278 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd | 0.84 | 78.0 | 7.42e-01 | 100.0% | 87.7% |
| 3978088 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 78.0 | 7.47e-01 | 100.0% | 90.8% |
| 3594081 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 75.0 | 6.67e-01 | 100.0% | 91.3% |
| 4185893 | 4.1.1.394 ↗ | beta barrels › SH3 › SH3 › SH3 › SlpA | 0.83 | 75.0 | 7.19e-01 | 98.2% | 98.5% |
| 142250 | 4.1.1.99 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_10 | 0.82 | 66.0 | 6.27e-01 | 100.0% | 75.4% |
| 4133335 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.81 | 71.0 | 6.96e-01 | 100.0% | 88.3% |
| 4104114 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.81 | 71.0 | 6.72e-01 | 100.0% | 81.5% |
| 3396896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 75.0 | 6.70e-01 | 98.2% | 78.7% |
| 3487686 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 70.0 | 6.04e-01 | 100.0% | 63.5% |
| 3539147 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.80 | 70.0 | 6.50e-01 | 100.0% | 77.1% |
| 3522947 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.79 | 70.0 | 6.70e-01 | 100.0% | 83.1% |
| 3906249 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.79 | 70.0 | 6.30e-01 | 100.0% | 72.0% |
| 3898363 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.79 | 69.0 | 6.44e-01 | 100.0% | 77.1% |
| 3621642 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.79 | 70.0 | 6.18e-01 | 100.0% | 68.8% |
| 3899851 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.78 | 69.0 | 6.55e-01 | 100.0% | 83.1% |
| 3659579 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.78 | 69.0 | 6.24e-01 | 100.0% | 72.0% |
| 3391702 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.78 | 69.0 | 6.07e-01 | 100.0% | 67.5% |
| 3569639 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.78 | 69.0 | 6.07e-01 | 100.0% | 67.5% |
| 3526950 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.78 | 69.0 | 6.79e-01 | 100.0% | 90.0% |
| 538 | 4.1.1.120 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_16 | 0.78 | 70.0 | 6.40e-01 | 100.0% | 86.5% |
| 4347828 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 69.0 | 6.40e-01 | 98.2% | 90.0% |
| 3882808 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.77 | 66.0 | 6.03e-01 | 100.0% | 72.0% |
| 3611968 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 70.0 | 6.33e-01 | 100.0% | 92.0% |
| 1545880 | 4.1.1.278 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd | 0.76 | 69.0 | 6.12e-01 | 100.0% | 75.0% |
| 165657 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.76 | 65.0 | 6.20e-01 | 100.0% | 80.6% |
| 3234274 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.76 | 68.0 | 6.32e-01 | 100.0% | 80.0% |
| 3607307 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.75 | 70.0 | 6.46e-01 | 100.0% | 87.1% |
| 3782313 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.75 | 69.0 | 6.23e-01 | 100.0% | 81.3% |
| 4171510 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.75 | 68.0 | 6.01e-01 | 100.0% | 70.0% |
| 3743973 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.75 | 69.0 | 6.10e-01 | 100.0% | 72.5% |
| 3936225 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 69.0 | 6.40e-01 | 100.0% | 81.4% |
| 3170649 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.75 | 69.0 | 5.95e-01 | 100.0% | 84.7% |
| 3263489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 65.0 | 6.25e-01 | 100.0% | 84.6% |
| 3710561 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.75 | 69.0 | 6.57e-01 | 100.0% | 93.8% |
| 3737805 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.75 | 68.0 | 6.20e-01 | 100.0% | 94.7% |
| 3891252 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.75 | 69.0 | 6.81e-01 | 100.0% | 95.0% |
| 3516244 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.74 | 66.0 | 5.82e-01 | 100.0% | 68.8% |
| 3526953 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.74 | 69.0 | 6.65e-01 | 100.0% | 90.5% |
| 3507664 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.74 | 67.0 | 6.60e-01 | 100.0% | 93.3% |
| 3899829 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.74 | 64.0 | 5.83e-01 | 100.0% | 72.0% |
| 4019491 | 601.16.1.7 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_9 | 0.74 | 68.0 | 4.51e-01 | 100.0% | 29.8% |
| 3697262 | 601.1.1.120 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › SH3_9 | 0.74 | 68.0 | 4.55e-01 | 100.0% | 31.3% |
| 3413864 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.73 | 64.0 | 4.57e-01 | 100.0% | 33.3% |
| 3498145 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.73 | 65.0 | 6.26e-01 | 100.0% | 85.9% |
| 4003171 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.73 | 66.0 | 5.82e-01 | 100.0% | 70.0% |
| 3203654 | 601.16.1.12 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 | 0.73 | 67.0 | 4.50e-01 | 100.0% | 30.5% |
| 3171604 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.73 | 68.0 | 6.10e-01 | 100.0% | 86.7% |
| 3180487 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.73 | 67.0 | 4.51e-01 | 100.0% | 31.3% |
| 3742291 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.73 | 67.0 | 6.41e-01 | 100.0% | 87.7% |
| 531 | 4.1.1.281 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_KALRN | 0.73 | 65.0 | 5.99e-01 | 100.0% | 81.1% |
| 3222195 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.72 | 65.0 | 6.21e-01 | 100.0% | 86.2% |
| 3246255 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.72 | 63.0 | 5.87e-01 | 100.0% | 78.6% |
| 3921563 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.72 | 64.0 | 5.68e-01 | 100.0% | 70.0% |
| 3401559 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.72 | 64.0 | 6.12e-01 | 100.0% | 86.2% |
| 3232165 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.71 | 63.0 | 5.41e-01 | 100.0% | 98.9% |
| 3504834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 46.0 | 4.67e-01 | 100.0% | 82.8% |
| 3556601 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.59 | 49.0 | 4.72e-01 | 100.0% | 81.5% |
D2
high
residues 105-162
Domain cluster:
rep: MK448998.1__QBX31359.1__Javan636_0004__00059__D112-179
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06347.20 best | SH3_4 | 28.6 | 1.40e-06 | 93.1% | 91.1% |
| PF08239.18 | SH3_3 | 59.1 | 5.60e-16 | 89.7% | 96.3% |
D3
high
residues 172-296
Domain cluster:
rep: NC_048757.1__YP_009844891.1__HWC13_gp082__00082__D259-407
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03734.20 best | YkuD | 98.5 | 7.50e-28 | 100.0% | 99.3% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mtzA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.90 | 76.0 | 7.79e-01 | 100.0% | 90.8% |
| 1zatA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.86 | 81.0 | 8.17e-01 | 100.0% | 99.2% |
| 4z7aA03 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.84 | 75.0 | 7.41e-01 | 100.0% | 88.5% |
| 3tx4A02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.83 | 80.0 | 7.64e-01 | 100.0% | 88.7% |
| 4lpqA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.81 | 76.0 | 7.55e-01 | 100.0% | 94.6% |
| 1an8A02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 33.0 | 4.28e-01 | 76.0% | 70.7% |
| 7kfuC01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.69 | 26.0 | 3.34e-01 | 100.0% | 57.3% |
| 2l0cA00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 35.0 | 3.92e-01 | 76.0% | 73.2% |
| 1y9zA02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.59 | 50.0 | 4.84e-01 | 93.6% | 97.9% |
| 4jbmB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 29.0 | 3.21e-01 | 72.8% | 61.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4302389 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.97 | 95.0 | 9.10e-01 | 100.0% | 90.6% |
| 3964337 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.93 | 91.0 | 7.44e-01 | 100.0% | 65.5% |
| 3968640 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.92 | 79.0 | 7.98e-01 | 100.0% | 88.8% |
| 3974213 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.91 | 88.0 | 8.29e-01 | 99.2% | 93.1% |
| 3957156 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.91 | 76.0 | 7.56e-01 | 100.0% | 83.1% |
| 3283151 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.91 | 75.0 | 8.07e-01 | 100.0% | 98.2% |
| 4679621 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.90 | 88.0 | 8.54e-01 | 100.0% | 97.8% |
| 1558018 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.90 | 78.0 | 7.75e-01 | 100.0% | 86.2% |
| None | — | 0.90 | 87.0 | 8.01e-01 | 99.2% | 90.0% | |
| 3981189 | 3743.1.1.0 ↗ | a+b two layers › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain | 0.90 | 87.0 | 6.83e-01 | 99.2% | 60.0% |
| 1681707 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.89 | 74.0 | 7.09e-01 | 100.0% | 75.9% |
| 2819641 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.87 | 83.0 | 6.59e-01 | 100.0% | 86.3% |
| 3163824 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.86 | 83.0 | 6.15e-01 | 100.0% | 71.6% |
| 3960486 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.86 | 81.0 | 7.50e-01 | 100.0% | 81.3% |
| 3951628 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.84 | 81.0 | 7.52e-01 | 100.0% | 96.0% |
| 1498421 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.84 | 74.0 | 6.93e-01 | 100.0% | 77.9% |
| 1220824 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.83 | 80.0 | 7.01e-01 | 100.0% | 72.4% |
| 4410211 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.83 | 80.0 | 7.90e-01 | 100.0% | 98.4% |
| 1120883 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.81 | 76.0 | 7.55e-01 | 100.0% | 94.6% |
| 3969743 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.80 | 77.0 | 7.37e-01 | 100.0% | 97.9% |
| 997880 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.80 | 76.0 | 7.50e-01 | 100.0% | 96.1% |
| 1684827 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.78 | 74.0 | 6.99e-01 | 100.0% | 91.1% |
| 3958193 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.77 | 72.0 | 6.70e-01 | 97.6% | 94.0% |
| 3971742 | 4091.1.1.2 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD_2 | 0.76 | 72.0 | 5.98e-01 | 100.0% | 70.5% |
| 3968622 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.68 | 54.0 | 5.50e-01 | 100.0% | 85.8% |
| 4293728 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.62 | 33.0 | 3.35e-01 | 100.0% | 50.4% |
| 3938793 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.61 | 25.0 | 3.63e-01 | 81.6% | 83.6% |
| 4880729 | 2.1.1.41 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C | 0.59 | 33.0 | 3.22e-01 | 74.4% | 50.4% |
| 3338295 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.57 | 49.0 | 4.79e-01 | 93.6% | 96.3% |
| 3355463 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.56 | 48.0 | 4.69e-01 | 93.6% | 92.1% |
| 3312837 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.55 | 48.0 | 4.70e-01 | 94.4% | 94.1% |
| 3468556 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.54 | 46.0 | 4.62e-01 | 94.4% | 93.8% |
| 3577103 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 34.0 | 3.49e-01 | 96.8% | 70.0% |