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SRR1747057_scaffold_1_prodigal-single.1__X__X__00270

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00270

Identity

Kingdom:
phage

Quality

75.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 31-96
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.73 51.0 4.76e-01 72.7% 86.4%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 65.0 5.60e-01 100.0% 80.6%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 63.0 5.27e-01 100.0% 88.8%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 62.0 5.31e-01 100.0% 86.8%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 61.0 5.47e-01 95.5% 85.4%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 59.0 5.35e-01 97.0% 86.8%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 59.0 4.90e-01 100.0% 81.4%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 48.0 4.44e-01 98.5% 60.7%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 54.0 4.25e-01 100.0% 81.7%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 4.56e-01 95.5% 80.3%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.61 43.0 3.88e-01 75.8% 96.9%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.60 43.0 2.97e-01 77.3% 47.8%
2ofqA01 2.60.40.2500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.96e-01 77.3% 83.1%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 40.0 4.17e-01 89.4% 77.4%
2r61A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 3.99e-01 92.4% 67.1%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 40.0 2.43e-01 71.2% 12.0%
4iv9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 45.0 3.00e-01 84.8% 59.1%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.57 47.0 3.79e-01 90.9% 62.5%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.52e-01 87.9% 60.0%
6nu8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 41.0 3.25e-01 80.3% 58.7%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.55 42.0 3.03e-01 87.9% 27.1%
1p6vA00 2.40.280.10 Mainly Beta › Beta Barrel › Small Protein B; Chain: A; › Small protein B 0.55 45.0 3.81e-01 97.0% 75.2%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 2.89e-01 90.9% 90.0%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.77e-01 100.0% 52.2%
2v5oA05 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.55 41.0 3.25e-01 78.8% 78.6%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.42e-01 84.8% 94.3%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.79e-01 83.3% 67.2%
3b1bA01 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.54 44.0 2.92e-01 92.4% 47.4%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.60e-01 87.9% 92.9%
3aabB00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.98e-01 98.5% 78.3%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 45.0 4.14e-01 98.5% 91.3%
1uqwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 36.0 3.01e-01 75.8% 41.1%
6z30A01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.53 36.0 2.98e-01 72.7% 82.7%
3zs6A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 37.0 2.85e-01 75.8% 53.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 34.0 3.53e-01 97.0% 71.2%
3nuiA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 39.0 3.04e-01 78.8% 76.0%
4xfwA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.53 40.0 2.92e-01 87.9% 45.1%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 38.0 2.45e-01 77.3% 97.1%
3nx3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 41.0 3.23e-01 84.8% 84.4%
1crmA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.52 41.0 2.87e-01 90.9% 51.6%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.52 39.0 2.90e-01 84.8% 98.5%
4gl8A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 37.0 2.92e-01 77.3% 52.6%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.38e-01 78.8% 86.5%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 41.0 3.28e-01 93.9% 65.6%
5kztA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 36.0 2.75e-01 75.8% 54.8%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 43.0 3.05e-01 97.0% 56.3%
3oksA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 40.0 3.08e-01 92.4% 80.7%
2dyiA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.51 37.0 3.68e-01 81.8% 74.6%
1zodA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 39.0 3.23e-01 90.9% 81.6%
1na8B00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 40.0 3.21e-01 90.9% 92.4%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.50 33.0 3.31e-01 72.7% 63.9%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.82 65.0 6.19e-01 98.5% 73.3%
3262323 220.1.1.21 beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.78 68.0 5.32e-01 95.5% 57.8%
3505883 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.78 65.0 4.98e-01 90.9% 53.8%
4019054 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.77 69.0 5.13e-01 100.0% 77.6%
5074480 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.77 69.0 5.44e-01 100.0% 78.5%
3992373 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.76 66.0 5.82e-01 93.9% 92.6%
5047735 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 68.0 5.06e-01 95.5% 57.7%
3475856 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.76 68.0 4.86e-01 100.0% 56.3%
4276957 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.75 51.0 5.57e-01 92.4% 85.5%
4001788 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.75 66.0 5.14e-01 97.0% 70.7%
4947834 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 66.0 5.57e-01 95.5% 75.2%
4174179 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.74 49.0 5.49e-01 95.5% 92.0%
3611112 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 63.0 4.73e-01 97.0% 65.0%
3828854 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.72 64.0 5.06e-01 100.0% 71.9%
3619347 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 64.0 5.27e-01 97.0% 77.4%
3909375 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.72 63.0 4.97e-01 97.0% 61.5%
3475699 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.72 63.0 5.37e-01 97.0% 78.1%
3480535 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 63.0 5.36e-01 97.0% 76.2%
3405436 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 62.0 5.11e-01 95.5% 92.2%
4307219 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.71 51.0 5.46e-01 95.5% 90.9%
3728770 220.1.1.201 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.71 61.0 5.14e-01 95.5% 78.2%
3772065 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.71 62.0 5.14e-01 97.0% 80.9%
3935357 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 60.0 4.93e-01 93.9% 55.8%
3990000 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.71 49.0 5.28e-01 100.0% 87.3%
3512537 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 63.0 5.22e-01 100.0% 81.7%
5071331 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 57.0 5.26e-01 95.5% 69.4%
3601659 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 4.52e-01 93.9% 49.3%
1413813 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.70 49.0 5.27e-01 95.5% 87.3%
3412282 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.70 61.0 5.00e-01 97.0% 70.8%
3231448 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.70 62.0 4.56e-01 97.0% 49.7%
3535499 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 62.0 5.24e-01 100.0% 81.8%
3548499 220.1.1.48 beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl 0.69 62.0 4.72e-01 100.0% 83.3%
4004179 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.69 60.0 4.06e-01 95.5% 34.3%
4110879 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.69 61.0 4.77e-01 97.0% 60.7%
3937784 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.69 61.0 4.82e-01 97.0% 65.4%
3280385 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.69 48.0 5.12e-01 89.4% 89.1%
4028300 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 5.07e-01 100.0% 83.6%
3500471 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.66 57.0 4.61e-01 97.0% 65.4%
4149829 220.1.1.114 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF5673 0.66 56.0 5.44e-01 95.5% 84.0%
4890130 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.65 46.0 4.66e-01 74.2% 98.5%
3185844 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 37.0 3.63e-01 71.2% 51.4%
176487 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.64 54.0 4.31e-01 100.0% 85.6%
4300446 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.63 53.0 5.10e-01 100.0% 86.3%
3604284 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 54.0 4.86e-01 100.0% 80.0%
3558982 11.1.1.21 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tissue_fac 0.61 43.0 3.76e-01 75.8% 83.8%
4603634 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.61 51.0 4.88e-01 100.0% 91.3%
3626345 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.46e-01 100.0% 81.8%
4190134 4104.1.1.1 beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 0.60 42.0 3.97e-01 84.8% 58.8%
4111598 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.59 50.0 4.84e-01 100.0% 92.0%
4242808 101.1.8.6 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat 0.58 46.0 3.83e-01 89.4% 52.5%
3705036 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 40.0 2.89e-01 74.2% 95.8%
3530796 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.57 39.0 3.56e-01 75.8% 80.0%
3268063 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.56 47.0 2.90e-01 92.4% 91.4%
3614448 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.56 36.0 2.25e-01 71.2% 10.8%
5076015 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 45.0 3.24e-01 87.9% 60.0%
4083733 708.1.1.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › Gti1_Pac2 0.56 41.0 3.08e-01 80.3% 71.2%
4259150 295.1.1.46 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.55 44.0 3.56e-01 89.4% 92.6%
3513090 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.55 44.0 3.73e-01 95.5% 57.6%
None 0.55 41.0 2.92e-01 83.3% 36.1%
3885623 101.1.8.12 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.55 41.0 3.16e-01 89.4% 43.7%
4955790 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.54 37.0 3.27e-01 72.7% 82.9%
3895743 3615.1.1.7 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 0.54 45.0 3.27e-01 93.9% 56.8%
3959837 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.84e-01 93.9% 69.4%
3788239 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 38.0 2.54e-01 80.3% 18.0%
4154013 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 36.0 3.15e-01 72.7% 56.0%
3797677 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 39.0 2.54e-01 81.8% 48.5%
3383999 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 42.0 2.93e-01 98.5% 62.3%
5024609 7523.1.1.3 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.50 36.0 2.73e-01 77.3% 53.0%