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SRR1747059_scaffold_20_prodigal-single.1__X__X__00019

Bact-Vir

SRR1747059_scaffold_20_prodigal-single.1__X__X__00019

Identity

Kingdom:
phage

Quality

55.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-59
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aq1A02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.85 77.0 5.99e-01 100.0% 60.4%
4aq1A03 2.60.40.3440 Mainly Beta › Sandwich › Immunoglobulin-like › 0.85 75.0 5.52e-01 100.0% 43.5%
1f00I02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.84 75.0 5.95e-01 100.0% 52.8%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.81 52.0 4.12e-01 100.0% 33.7%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.81 51.0 3.72e-01 97.8% 26.4%
1lxmA04 2.60.40.1380 Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 0.80 68.0 5.78e-01 100.0% 59.2%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.79 51.0 4.11e-01 100.0% 36.1%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.76 65.0 5.36e-01 100.0% 65.9%
3gm8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 61.0 4.66e-01 100.0% 61.8%
5euvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 61.0 4.86e-01 100.0% 58.5%
2qsqB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 60.0 4.63e-01 100.0% 71.3%
1o75A03 2.60.40.1300 Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain C 0.70 61.0 4.43e-01 100.0% 59.4%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.70 49.0 3.55e-01 100.0% 29.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.70 47.0 3.89e-01 100.0% 40.0%
4qycB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 59.0 4.68e-01 100.0% 77.8%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.68 44.0 3.36e-01 100.0% 27.3%
4jguA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 58.0 4.63e-01 100.0% 51.6%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 40.0 3.39e-01 97.8% 37.7%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.64 52.0 4.83e-01 100.0% 71.4%
5oj2A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 49.0 4.26e-01 100.0% 72.4%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.64 44.0 3.33e-01 95.6% 29.1%
5tf0B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 4.14e-01 100.0% 70.3%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.63 52.0 3.70e-01 100.0% 70.5%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.37e-01 100.0% 66.7%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 41.0 3.01e-01 100.0% 22.8%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 4.08e-01 82.2% 76.9%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.75e-01 100.0% 48.0%
1q15A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 49.0 3.31e-01 100.0% 35.1%
1xakA00 2.60.40.1550 Mainly Beta › Sandwich › Immunoglobulin-like › SARS coronavirus X4 0.60 46.0 4.25e-01 100.0% 64.7%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.58 50.0 3.40e-01 100.0% 28.3%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 52.0 3.30e-01 100.0% 35.8%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 40.0 3.08e-01 100.0% 31.5%
2gshA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 49.0 3.36e-01 100.0% 48.8%
3ik4B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 51.0 3.71e-01 100.0% 40.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 3.49e-01 100.0% 48.5%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 51.0 3.74e-01 100.0% 42.1%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.56 49.0 4.82e-01 100.0% 92.0%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 2.70e-01 100.0% 14.0%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.56 49.0 3.18e-01 100.0% 29.4%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.56 50.0 3.66e-01 100.0% 62.9%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 51.0 3.71e-01 100.0% 42.1%
2vr3B02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.23e-01 100.0% 75.5%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 41.0 2.76e-01 100.0% 20.0%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 50.0 2.83e-01 100.0% 12.8%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 46.0 2.82e-01 100.0% 14.4%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.55 48.0 3.33e-01 100.0% 51.6%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 49.0 3.35e-01 100.0% 31.5%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 49.0 3.40e-01 100.0% 34.8%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 2.69e-01 84.4% 80.7%
1lmeA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.54 46.0 3.22e-01 100.0% 34.4%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.52 43.0 2.86e-01 100.0% 95.9%
3g5kA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 43.0 2.96e-01 100.0% 29.5%
1rl4B00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 43.0 3.04e-01 100.0% 34.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
409389 11.1.1.870 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26918 0.87 79.0 6.08e-01 100.0% 47.4%
4196085 11.1.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.86 77.0 6.16e-01 100.0% 52.9%
3855675 11.1.1.898 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_16th 0.85 75.0 6.19e-01 100.0% 57.5%
3566232 11.1.1.898 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_16th 0.84 75.0 5.65e-01 100.0% 43.8%
3996413 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.84 74.0 6.23e-01 100.0% 64.0%
3584255 11.1.1.898 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_16th 0.82 71.0 6.07e-01 100.0% 64.0%
3585020 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 63.0 5.82e-01 97.8% 88.3%
3266722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 61.0 5.17e-01 100.0% 53.8%
4935248 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 65.0 4.48e-01 100.0% 60.0%
3773475 3414.1.1.6 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › HYR 0.73 58.0 4.66e-01 100.0% 45.9%
4954463 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 64.0 5.99e-01 100.0% 90.9%
5013353 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.72 58.0 4.60e-01 100.0% 43.2%
5013352 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.71 57.0 5.35e-01 100.0% 72.7%
5012584 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.71 62.0 5.24e-01 100.0% 61.3%
3388495 3414.1.1.6 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › HYR 0.70 54.0 4.57e-01 100.0% 50.7%
5012585 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.70 56.0 5.03e-01 100.0% 63.1%
5040999 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.70 59.0 4.62e-01 100.0% 69.5%
4986938 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.70 56.0 4.95e-01 100.0% 60.0%
5002043 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 62.0 4.59e-01 100.0% 51.3%
4968752 11.1.1.1410 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.69 60.0 4.53e-01 100.0% 45.5%
4969981 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 59.0 4.95e-01 100.0% 62.5%
3269711 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 59.0 5.07e-01 100.0% 61.3%
4346150 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.69 57.0 4.93e-01 100.0% 60.0%
3264986 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.68 46.0 3.45e-01 100.0% 29.1%
5061523 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.68 58.0 4.79e-01 100.0% 63.5%
5060514 11.1.1.1407 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3869 0.68 59.0 5.40e-01 100.0% 75.0%
5034928 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.68 58.0 4.88e-01 100.0% 56.2%
5061282 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.68 57.0 4.96e-01 100.0% 62.7%
5012586 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.68 53.0 4.83e-01 100.0% 63.1%
3410439 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.68 59.0 4.93e-01 100.0% 60.0%
3863406 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.68 59.0 5.02e-01 100.0% 62.7%
4421680 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.67 59.0 4.87e-01 100.0% 58.7%
2472963 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.66 55.0 4.59e-01 100.0% 52.3%
4047163 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.66 55.0 4.60e-01 100.0% 57.6%
3537409 11.1.1.533 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYR 0.66 51.0 4.22e-01 100.0% 47.1%
5014779 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.65 53.0 4.57e-01 100.0% 62.5%
5025182 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 54.0 4.54e-01 100.0% 63.5%
3901343 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.65 55.0 4.73e-01 100.0% 61.3%
3797667 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 49.0 4.15e-01 100.0% 48.8%
3768152 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 52.0 4.90e-01 100.0% 98.3%
4982110 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 52.0 4.00e-01 100.0% 68.3%
3371185 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.63 46.0 2.81e-01 100.0% 12.0%
4957818 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.63 52.0 4.40e-01 100.0% 58.8%
5052057 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.62 53.0 3.60e-01 97.8% 100.0%
3927937 11.1.1.533 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYR 0.61 47.0 3.95e-01 100.0% 48.8%
3284356 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.60 51.0 3.23e-01 100.0% 95.8%
3263529 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 4.07e-01 100.0% 62.2%
4871277 1.1.1.10 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.59 50.0 3.39e-01 100.0% 56.3%
3255783 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.57 48.0 4.19e-01 100.0% 61.4%
2507516 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.56 46.0 2.64e-01 100.0% 25.7%
3466381 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 49.0 3.67e-01 100.0% 45.5%
163996 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 50.0 3.56e-01 100.0% 38.3%
3326632 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.52 42.0 3.33e-01 100.0% 44.2%
4311336 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.52 40.0 2.57e-01 100.0% 40.6%
D2 medium residues 63-141
PDB