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SRR1747059_scaffold_20_prodigal-single.1__X__X__00129
Bact-VirSRR1747059_scaffold_20_prodigal-single.1__X__X__00129
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-75
D2
high
residues 82-174
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iuwA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.75 | 57.0 | 6.16e-01 | 100.0% | 94.9% |
| 2ar1A00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.68 | 61.0 | 5.15e-01 | 100.0% | 63.7% |
| 1t62B00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.65 | 59.0 | 4.89e-01 | 100.0% | 76.1% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 41.0 | 3.94e-01 | 81.7% | 57.0% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.63 | 53.0 | 4.28e-01 | 100.0% | 48.9% |
| 3s9xA00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.63 | 55.0 | 4.68e-01 | 100.0% | 79.2% |
| 1nbwA02 | 3.90.470.30 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain | 0.60 | 46.0 | 3.98e-01 | 80.6% | 94.4% |
| 8gpsA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.59 | 34.0 | 3.24e-01 | 90.3% | 47.7% |
| 4necC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 50.0 | 3.81e-01 | 96.8% | 45.7% |
| 3u6yA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.57 | 47.0 | 4.67e-01 | 94.6% | 84.8% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.55 | 48.0 | 4.21e-01 | 100.0% | 85.2% |
| 1vr9A02 | 3.10.20.750 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 33.0 | 3.91e-01 | 98.9% | 100.0% |
| 3lv9A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 35.0 | 3.22e-01 | 100.0% | 47.7% |
| 1cqmA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.54 | 37.0 | 3.65e-01 | 81.7% | 66.3% |
| 2i6gB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 45.0 | 3.58e-01 | 93.5% | 44.2% |
| 7r5mA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 40.0 | 3.10e-01 | 80.6% | 79.8% |
| 3j7yU00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 43.0 | 4.08e-01 | 97.8% | 73.9% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.53 | 41.0 | 3.20e-01 | 87.1% | 37.2% |
| 6h1wA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 35.0 | 3.34e-01 | 100.0% | 54.7% |
| 6qdwt00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 45.0 | 4.58e-01 | 100.0% | 97.8% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 3.69e-01 | 97.8% | 79.3% |
| 2j5aA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 36.0 | 3.49e-01 | 81.7% | 63.2% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 36.0 | 3.17e-01 | 100.0% | 47.5% |
| 4f0aB02 | 3.30.2460.20 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain | 0.52 | 32.0 | 3.66e-01 | 93.5% | 86.8% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.51 | 37.0 | 3.96e-01 | 80.6% | 93.3% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.51 | 40.0 | 3.69e-01 | 84.9% | 74.0% |
| 1s1fA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 44.0 | 2.90e-01 | 95.7% | 70.3% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.51 | 38.0 | 3.66e-01 | 81.7% | 70.5% |
| 4q52A00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.51 | 43.0 | 3.57e-01 | 96.8% | 76.0% |
| 5iipA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 33.0 | 3.13e-01 | 100.0% | 52.6% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 43.0 | 3.52e-01 | 97.8% | 80.0% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938551 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.72 | 61.0 | 6.18e-01 | 97.8% | 92.2% |
| 5012991 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.70 | 63.0 | 5.81e-01 | 100.0% | 79.2% |
| 5083501 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.70 | 60.0 | 6.15e-01 | 100.0% | 97.8% |
| 4986730 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.70 | 64.0 | 5.74e-01 | 100.0% | 77.6% |
| 3418029 | 1.1.9.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 | 0.69 | 62.0 | 5.04e-01 | 100.0% | 77.7% |
| 4939497 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.68 | 61.0 | 5.57e-01 | 100.0% | 77.6% |
| 5067499 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.62 | 42.0 | 3.80e-01 | 81.7% | 50.8% |
| 4809499 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.60 | 46.0 | 4.79e-01 | 94.6% | 89.4% |
| 3604793 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.60 | 47.0 | 4.08e-01 | 96.8% | 52.7% |
| 3239454 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.58 | 49.0 | 4.29e-01 | 96.8% | 66.0% |
| 5078578 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.58 | 44.0 | 3.82e-01 | 81.7% | 64.6% |
| 3974575 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 44.0 | 4.40e-01 | 96.8% | 79.6% |
| 3946710 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 45.0 | 4.23e-01 | 98.9% | 68.3% |
| 4808078 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.56 | 38.0 | 4.06e-01 | 80.6% | 85.3% |
| 3988580 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.56 | 46.0 | 4.44e-01 | 100.0% | 79.1% |
| 3820049 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.56 | 40.0 | 4.23e-01 | 81.7% | 86.3% |
| 4131100 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.55 | 44.0 | 3.94e-01 | 97.8% | 60.7% |
| 4940451 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.55 | 39.0 | 3.47e-01 | 74.2% | 92.6% |
| 4057993 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.54 | 46.0 | 4.53e-01 | 98.9% | 87.0% |
| 3738615 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.54 | 41.0 | 3.92e-01 | 97.8% | 67.8% |
| 5028693 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 46.0 | 3.55e-01 | 95.7% | 46.5% |
| 4500557 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.53 | 43.0 | 4.20e-01 | 96.8% | 79.0% |
| 4257969 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 42.0 | 3.83e-01 | 96.8% | 62.8% |
| 4174485 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.53 | 44.0 | 4.40e-01 | 98.9% | 89.5% |
| 4929759 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.53 | 47.0 | 3.97e-01 | 100.0% | 98.1% |
| 3973612 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.52 | 45.0 | 4.30e-01 | 100.0% | 90.4% |
| 261 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.52 | 40.0 | 3.12e-01 | 100.0% | 36.3% |
| 3660143 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 42.0 | 3.16e-01 | 95.7% | 32.5% |
| 1125238 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.52 | 40.0 | 4.13e-01 | 95.7% | 90.8% |
| 4147311 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.52 | 44.0 | 4.35e-01 | 100.0% | 89.0% |
| 3665260 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 40.0 | 3.13e-01 | 94.6% | 35.6% |
| 1507020 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.52 | 40.0 | 3.36e-01 | 83.9% | 71.2% |
| 3654241 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 42.0 | 2.61e-01 | 95.7% | 13.7% |
| 3711494 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.51 | 36.0 | 3.64e-01 | 79.6% | 72.6% |
| 4182477 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.51 | 45.0 | 4.40e-01 | 98.9% | 93.0% |
| 4234820 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.51 | 43.0 | 4.28e-01 | 98.9% | 89.0% |
| 1505358 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.50 | 39.0 | 3.28e-01 | 83.9% | 70.3% |
| 3184975 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.50 | 42.0 | 2.92e-01 | 94.6% | 46.3% |
| 4972140 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.50 | 41.0 | 3.60e-01 | 100.0% | 57.3% |
| 4487061 | 328.8.1.1 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 | 0.50 | 43.0 | 3.64e-01 | 98.9% | 56.5% |
| 5028788 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.50 | 35.0 | 3.13e-01 | 74.2% | 89.3% |