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SRR1747059_scaffold_20_prodigal-single.1__X__X__00135
Bact-VirSRR1747059_scaffold_20_prodigal-single.1__X__X__00135
Identity
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-81
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 54.0 | 6.03e-01 | 77.6% | 100.0% |
| 5tgtA02 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.70 | 57.0 | 4.92e-01 | 90.8% | 75.6% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 47.0 | 5.16e-01 | 71.1% | 96.7% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.50e-01 | 84.2% | 86.4% |
| 2qwtA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 46.0 | 3.61e-01 | 80.3% | 68.9% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 45.0 | 3.72e-01 | 80.3% | 81.8% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 42.0 | 3.81e-01 | 75.0% | 62.2% |
| 3nqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.59 | 50.0 | 4.07e-01 | 96.1% | 96.6% |
| 4q5qB00 | 1.20.1050.130 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 42.0 | 3.26e-01 | 80.3% | 83.5% |
| 3rbtA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 40.0 | 3.48e-01 | 73.7% | 59.8% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.57 | 42.0 | 4.23e-01 | 82.9% | 81.0% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 33.0 | 3.46e-01 | 90.8% | 62.5% |
| 2a2lC00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.55 | 41.0 | 3.43e-01 | 81.6% | 83.2% |
| 1sxjC03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.55 | 36.0 | 3.38e-01 | 71.1% | 53.7% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.54 | 39.0 | 3.86e-01 | 88.2% | 72.2% |
| 4gouA01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.53 | 42.0 | 3.45e-01 | 88.2% | 59.5% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 45.0 | 4.46e-01 | 100.0% | 89.2% |
| 2psmA00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.52 | 42.0 | 3.72e-01 | 89.5% | 100.0% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.52 | 32.0 | 3.35e-01 | 92.1% | 65.7% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.52 | 45.0 | 3.84e-01 | 96.1% | 83.9% |
| 4gr6B00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.51 | 32.0 | 2.91e-01 | 88.2% | 43.8% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185149 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.80 | 52.0 | 6.12e-01 | 73.7% | 100.0% |
| 1068638 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.76 | 54.0 | 6.03e-01 | 77.6% | 100.0% |
| 4093240 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.75 | 52.0 | 5.85e-01 | 73.7% | 100.0% |
| 4599915 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.74 | 52.0 | 5.59e-01 | 76.3% | 86.2% |
| 4073017 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.71 | 49.0 | 5.50e-01 | 73.7% | 98.2% |
| 3781058 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 48.0 | 5.36e-01 | 76.3% | 100.0% |
| 3225250 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.69 | 54.0 | 5.46e-01 | 85.5% | 100.0% |
| 3726085 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.67 | 49.0 | 4.75e-01 | 81.6% | 69.4% |
| 4380725 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 43.0 | 4.37e-01 | 77.6% | 70.7% |
| 3963650 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 39.0 | 4.38e-01 | 73.7% | 100.0% |
| 3039253 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.60 | 42.0 | 3.22e-01 | 75.0% | 70.9% |
| 3942599 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 45.0 | 4.45e-01 | 81.6% | 78.8% |
| 3241028 | 101.1.2.649 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28730 | 0.59 | 43.0 | 4.16e-01 | 80.3% | 70.6% |
| 3402084 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 46.0 | 4.44e-01 | 86.8% | 82.4% |
| 3180581 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.57 | 37.0 | 3.56e-01 | 96.1% | 58.8% |
| 3284812 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.56 | 47.0 | 3.56e-01 | 94.7% | 50.5% |
| 4964531 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.56 | 38.0 | 2.79e-01 | 71.1% | 41.9% |
| 3575981 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.55 | 41.0 | 4.09e-01 | 81.6% | 100.0% |
| 4940618 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.55 | 43.0 | 4.25e-01 | 86.8% | 97.5% |
| 1323419 | 316.1.1.34 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DncV-like_NTFase | 0.54 | 44.0 | 3.17e-01 | 94.7% | 41.7% |
| 4826575 | 150.1.1.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 | 0.53 | 36.0 | 3.91e-01 | 97.4% | 83.1% |
| 1680485 | 4963.1.2.1 ↗ | alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal domain in vesicular stomatitis virus RNA polymerase L › Mononeg_RNA_pol | 0.51 | 42.0 | 2.82e-01 | 94.7% | 26.1% |
| None | — | 0.50 | 38.0 | 2.67e-01 | 82.9% | 51.3% | |
| 4319975 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.50 | 43.0 | 4.08e-01 | 94.7% | 97.8% |