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SRR1747059_scaffold_22_prodigal-single.1__X__X__00025

Bact-Vir

SRR1747059_scaffold_22_prodigal-single.1__X__X__00025

Identity

Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-71
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.92 61.0 5.38e-01 72.5% 49.5%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.88 55.0 6.44e-01 76.8% 91.7%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 54.0 6.22e-01 85.5% 92.2%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.72 56.0 5.52e-01 100.0% 78.1%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.69 50.0 5.31e-01 76.8% 88.7%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.67 54.0 5.69e-01 97.1% 96.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.01e-01 71.0% 69.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.17e-01 73.9% 71.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.83e-01 78.3% 71.0%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 40.0 3.69e-01 82.6% 82.4%
1cb8A02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 40.0 2.78e-01 85.5% 47.6%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.51 37.0 3.43e-01 79.7% 95.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1322862 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.92 62.0 7.42e-01 100.0% 100.0%
4110715 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.89 65.0 7.00e-01 79.7% 88.1%
3972100 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.89 58.0 5.95e-01 78.3% 70.8%
1694867 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.88 62.0 7.05e-01 73.9% 94.3%
3971347 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.86 64.0 6.97e-01 78.3% 91.4%
5026481 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.86 55.0 6.33e-01 76.8% 90.0%
4444075 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 51.0 6.25e-01 71.0% 97.7%
4009007 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.83 55.0 6.31e-01 73.9% 94.0%
2389402 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.81 55.0 6.09e-01 85.5% 88.9%
4233290 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.81 54.0 6.30e-01 98.6% 96.0%
4307941 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.80 55.0 5.92e-01 71.0% 94.9%
3976685 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 53.0 5.98e-01 72.5% 94.4%
2966957 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.74 59.0 5.39e-01 87.0% 72.8%
1291025 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.72 56.0 5.52e-01 100.0% 78.1%
2736861 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.70 50.0 5.06e-01 79.7% 77.6%
8553 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.69 50.0 5.31e-01 76.8% 88.7%
1002430 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.67 54.0 5.69e-01 97.1% 96.7%
4996605 70.3.1.12 beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.62 42.0 4.07e-01 71.0% 93.8%
3934136 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.60 47.0 3.49e-01 85.5% 66.9%
3769766 270.1.1.2 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.56 39.0 3.33e-01 73.9% 75.0%
4009092 2.1.1.139 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Slp 0.53 40.0 3.36e-01 82.6% 90.4%
4583568 2004.1.1.211 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P 0.51 43.0 2.90e-01 100.0% 31.3%
3742605 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 41.0 2.66e-01 91.3% 34.0%
D2 high residues 83-130
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.83 65.0 6.52e-01 100.0% 85.4%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.81 68.0 5.39e-01 100.0% 47.4%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.79 61.0 6.04e-01 100.0% 80.4%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.79 64.0 6.61e-01 97.9% 97.8%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.78 61.0 5.37e-01 100.0% 57.5%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.75 67.0 6.18e-01 100.0% 90.2%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.66 58.0 5.37e-01 100.0% 80.6%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 47.0 4.86e-01 89.6% 84.1%
3k3sH01 2.30.130.110 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.64 52.0 4.50e-01 95.8% 89.0%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 47.0 3.28e-01 100.0% 25.8%
4n0qA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 46.0 3.24e-01 100.0% 27.3%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.60 44.0 3.89e-01 79.2% 93.1%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 36.0 3.12e-01 75.0% 39.2%
1ghjA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 47.0 4.05e-01 93.8% 72.2%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 35.0 3.15e-01 75.0% 43.3%
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 49.0 3.36e-01 100.0% 27.6%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.53 45.0 3.29e-01 95.8% 89.4%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 42.0 3.54e-01 93.8% 55.2%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.52e-01 97.9% 87.0%
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.51 38.0 2.81e-01 85.4% 42.5%
3hiaA00 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.50 39.0 3.60e-01 89.6% 63.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625628 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.88 50.0 4.23e-01 93.8% 37.3%
5026481 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.85 65.0 6.45e-01 100.0% 80.0%
4110715 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 71.0 6.66e-01 100.0% 76.3%
3971347 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 71.0 6.70e-01 100.0% 77.6%
1322862 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 72.0 7.22e-01 100.0% 93.8%
3972100 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.84 67.0 6.02e-01 100.0% 64.6%
4233290 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 69.0 6.81e-01 100.0% 88.0%
3230187 391.1.2.9 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.82 49.0 4.14e-01 89.6% 38.7%
2389402 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.81 62.0 6.06e-01 100.0% 75.9%
4026053 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.79 55.0 5.84e-01 83.3% 87.5%
1322863 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.79 65.0 6.68e-01 97.9% 95.7%
1694867 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.79 69.0 6.68e-01 100.0% 88.7%
4009007 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.79 64.0 6.38e-01 100.0% 88.0%
1291025 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 61.0 5.37e-01 100.0% 57.5%
4009008 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 68.0 6.54e-01 97.9% 90.9%
4307941 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 69.0 6.43e-01 100.0% 93.2%
4444075 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 60.0 6.23e-01 100.0% 95.3%
3222227 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.75 49.0 2.94e-01 83.3% 10.2%
3981632 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.74 51.0 5.44e-01 89.6% 87.5%
4020598 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.70 47.0 2.70e-01 100.0% 7.0%
3512437 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.69 44.0 4.71e-01 87.5% 77.5%
3507373 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.69 46.0 3.91e-01 95.8% 44.0%
3508453 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.69 45.0 4.98e-01 95.8% 91.4%
3516455 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.68 43.0 4.83e-01 93.8% 88.6%
3518437 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.68 45.0 3.89e-01 95.8% 44.0%
3931939 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.68 44.0 3.80e-01 89.6% 42.7%
4996605 70.3.1.12 beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.67 52.0 4.45e-01 87.5% 87.5%
3582045 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.66 43.0 4.77e-01 93.8% 91.4%
3629049 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.66 43.0 3.46e-01 93.8% 33.7%
8553 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.66 58.0 5.37e-01 100.0% 80.6%
3520959 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 43.0 4.78e-01 93.8% 91.4%
3520811 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.66 37.0 3.18e-01 75.0% 38.6%
5047208 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.66 47.0 4.55e-01 89.6% 67.3%
4935174 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.65 46.0 4.74e-01 89.6% 80.0%
3518897 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.63 41.0 4.55e-01 93.8% 91.4%
5014541 5090.1.1.11 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.63 44.0 3.33e-01 75.0% 74.2%
4963049 4.1.1.486 beta barrels › SH3 › SH3 › SH3 › DUF7098 0.62 50.0 4.17e-01 87.5% 56.2%
3857417 1.1.2.42 beta barrels › cradle loop barrel › RIFT-related › double psi › PF29595 0.58 48.0 4.25e-01 95.8% 68.0%
5022325 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.58 47.0 3.76e-01 91.7% 54.0%
5041151 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.57 45.0 4.00e-01 89.6% 72.9%
3934136 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.56 48.0 3.32e-01 100.0% 27.5%
3166926 229.1.1.10 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PF29595 0.56 46.0 3.89e-01 95.8% 61.2%
3489759 229.1.1.10 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PF29595 0.56 46.0 3.74e-01 95.8% 52.0%
3573819 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.54 37.0 3.76e-01 95.8% 73.5%
3584335 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 32.0 3.66e-01 75.0% 77.1%
3310327 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.51 40.0 2.34e-01 85.4% 94.9%
3399675 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 32.0 2.95e-01 75.0% 46.2%