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SRR1747059_scaffold_22_prodigal-single.1__X__X__00182
Bact-VirSRR1747059_scaffold_22_prodigal-single.1__X__X__00182
Identity
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-43
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zxuA00 | 2.40.160.200 | Mainly Beta › Beta Barrel › Porin › LURP1-related | 0.70 | 49.0 | 3.26e-01 | 74.4% | 30.2% |
| 3irpX01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 56.0 | 3.92e-01 | 100.0% | 27.6% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.68 | 48.0 | 3.77e-01 | 74.4% | 87.6% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.66 | 45.0 | 3.16e-01 | 72.1% | 34.5% |
| 4mboA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 54.0 | 3.77e-01 | 100.0% | 27.8% |
| 1eqnB01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.65 | 48.0 | 3.49e-01 | 81.4% | 70.6% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.63 | 46.0 | 2.81e-01 | 81.4% | 28.3% |
| 2f2hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 49.0 | 3.69e-01 | 90.7% | 36.7% |
| 3mmyA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 41.0 | 2.45e-01 | 72.1% | 56.5% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.60 | 51.0 | 3.25e-01 | 100.0% | 77.0% |
| 3ddjA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.59 | 49.0 | 3.42e-01 | 93.0% | 90.9% |
| 8gpsA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.59 | 41.0 | 3.12e-01 | 86.0% | 29.9% |
| 3payB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 40.0 | 2.94e-01 | 74.4% | 73.5% |
| 3ddjA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.58 | 43.0 | 3.08e-01 | 83.7% | 25.7% |
| 1lmeA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.58 | 40.0 | 2.80e-01 | 81.4% | 20.1% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 46.0 | 2.82e-01 | 100.0% | 47.7% |
| 7ahhC02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.57 | 38.0 | 2.98e-01 | 86.0% | 29.5% |
| 1wubA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.57 | 39.0 | 2.64e-01 | 72.1% | 56.8% |
| 3pieA02 | 3.30.1370.250 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.57 | 33.0 | 2.58e-01 | 97.7% | 25.0% |
| 3l2bA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 44.0 | 3.32e-01 | 90.7% | 42.7% |
| 6bbtB01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 2.83e-01 | 74.4% | 72.1% |
| 2nycA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 44.0 | 3.21e-01 | 90.7% | 41.5% |
| 1ta9B01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 41.0 | 2.92e-01 | 86.0% | 25.7% |
| 4cooA03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 43.0 | 3.10e-01 | 90.7% | 38.7% |
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 38.0 | 3.09e-01 | 79.1% | 53.5% |
| 3ctuA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 43.0 | 3.05e-01 | 93.0% | 89.7% |
| 2ft0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 47.0 | 3.01e-01 | 100.0% | 42.3% |
| 1zfjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 44.0 | 2.52e-01 | 95.3% | 10.1% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 39.0 | 3.03e-01 | 100.0% | 82.2% |
| 1miqA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 37.0 | 2.79e-01 | 93.0% | 55.9% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 2.87e-01 | 90.7% | 84.9% |
| 4blpB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 39.0 | 2.53e-01 | 95.3% | 65.9% |
| 2oo4A02 | 3.30.70.3310 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 3.11e-01 | 97.7% | 53.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4273033 | 3894.1.1.2 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD | 0.78 | 54.0 | 3.79e-01 | 72.1% | 41.6% |
| 3888035 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 49.0 | 3.78e-01 | 83.7% | 33.0% |
| 3652288 | 145.1.1.50 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_1 | 0.69 | 51.0 | 2.98e-01 | 74.4% | 78.1% |
| 4111045 | 243.1.1.64 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_2nd | 0.68 | 59.0 | 4.38e-01 | 97.7% | 95.2% |
| 4431057 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.67 | 53.0 | 3.77e-01 | 93.0% | 49.7% |
| 4016860 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.67 | 50.0 | 4.39e-01 | 90.7% | 53.8% |
| 5002524 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.67 | 46.0 | 3.43e-01 | 81.4% | 26.1% |
| 4163835 | 11.1.5.56 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Zona_CL1 | 0.66 | 54.0 | 3.79e-01 | 100.0% | 28.3% |
| 3921684 | 319.1.1.14 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 | 0.62 | 53.0 | 3.47e-01 | 100.0% | 69.2% |
| 3632795 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.61 | 39.0 | 2.88e-01 | 97.7% | 26.4% |
| 4465258 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.61 | 45.0 | 3.53e-01 | 93.0% | 36.0% |
| 3982093 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.60 | 47.0 | 3.42e-01 | 97.7% | 28.6% |
| 3411216 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.60 | 46.0 | 3.54e-01 | 95.3% | 36.0% |
| 4499276 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.60 | 45.0 | 3.73e-01 | 93.0% | 45.0% |
| 3839957 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.60 | 53.0 | 3.09e-01 | 100.0% | 16.5% |
| 3767876 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.59 | 44.0 | 3.14e-01 | 93.0% | 24.8% |
| 3559319 | 101.1.11.134 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › Sarcoglycan_1 | 0.59 | 42.0 | 3.87e-01 | 83.7% | 56.7% |
| 3921128 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 41.0 | 2.68e-01 | 72.1% | 63.9% |
| 3904700 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.58 | 41.0 | 3.16e-01 | 90.7% | 30.0% |
| 5051489 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 48.0 | 3.33e-01 | 100.0% | 56.7% |
| 5041160 | 213.1.1.37 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_18 | 0.55 | 47.0 | 3.21e-01 | 100.0% | 47.5% |
| 5042979 | 241.1.1.30 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 | 0.54 | 41.0 | 2.93e-01 | 88.4% | 44.0% |
| 4226159 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.54 | 43.0 | 3.63e-01 | 90.7% | 86.7% |
| 5076987 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.54 | 41.0 | 2.58e-01 | 97.7% | 19.4% |
| 3791305 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 46.0 | 3.00e-01 | 100.0% | 39.0% |
| 3272787 | 213.1.1.19 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 | 0.53 | 44.0 | 3.07e-01 | 100.0% | 52.5% |
| 3910175 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 2.96e-01 | 83.7% | 32.4% |
| 4025970 | 306.3.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 | 0.53 | 39.0 | 3.25e-01 | 88.4% | 62.2% |
| 4838661 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 42.0 | 3.24e-01 | 97.7% | 65.1% |
| 4948416 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.52 | 40.0 | 2.95e-01 | 95.3% | 49.3% |
| 3911145 | 223.7.1.1 ↗ | a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like | 0.51 | 43.0 | 3.07e-01 | 100.0% | 62.1% |
| 4946684 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.51 | 37.0 | 2.30e-01 | 93.0% | 10.6% |
| 4045455 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 41.0 | 3.23e-01 | 88.4% | 62.4% |