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SRR1747061_scaffold_21_prodigal-single.1__X__X__00323
Bact-VirSRR1747061_scaffold_21_prodigal-single.1__X__X__00323
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-75
Domain cluster:
rep: Filtrate_w_scaffold_6_prodigal-single.1__X__X__00314__D95-163
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07230.17 best | Portal_T4 | 34.4 | 1.50e-08 | 100.0% | 14.6% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ghhA00 | 3.30.910.10 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like | 0.72 | 51.0 | 4.91e-01 | 100.0% | 65.4% |
| 2npbA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.67 | 47.0 | 4.34e-01 | 100.0% | 58.0% |
| 2r75102 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.66 | 47.0 | 4.03e-01 | 100.0% | 47.3% |
| 1ofuA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.63 | 47.0 | 4.34e-01 | 100.0% | 60.2% |
| 3cb2A02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.59 | 46.0 | 4.12e-01 | 100.0% | 60.6% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.58 | 43.0 | 3.63e-01 | 100.0% | 44.5% |
| 4mp4A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 38.0 | 3.50e-01 | 100.0% | 53.9% |
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 42.0 | 2.65e-01 | 80.0% | 95.7% |
| 2mcqA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.55 | 36.0 | 3.52e-01 | 88.6% | 62.7% |
| 2in3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 39.0 | 3.75e-01 | 100.0% | 65.4% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 42.0 | 3.56e-01 | 87.1% | 53.6% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 33.0 | 3.07e-01 | 87.1% | 47.3% |
| 4g9yA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 2.86e-01 | 72.9% | 83.8% |
| 1r5pB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 44.0 | 4.09e-01 | 100.0% | 96.8% |
| 2diyA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 41.0 | 3.56e-01 | 100.0% | 56.8% |
| 1p4xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 34.0 | 2.83e-01 | 70.0% | 95.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2784294 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.71 | 53.0 | 5.28e-01 | 100.0% | 77.5% |
| 3938088 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.59 | 45.0 | 2.64e-01 | 84.3% | 17.1% |
| 3722505 | 2485.1.1.20 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like | 0.58 | 51.0 | 4.11e-01 | 100.0% | 62.1% |
| 4014802 | 328.6.1.0 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like | 0.55 | 32.0 | 2.26e-01 | 85.7% | 16.5% |
| 4158600 | 101.1.2.231 ↗ | alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot | 0.55 | 37.0 | 2.96e-01 | 70.0% | 82.8% |
| 4990342 | 3688.1.1.1 ↗ | a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N | 0.54 | 30.0 | 2.92e-01 | 85.7% | 42.5% |
| 5003263 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 45.0 | 3.78e-01 | 100.0% | 55.8% |
| 3977036 | 2485.4.1.1 ↗ | a+b three layers › Thioredoxin-like › Fumarate hydratase N-terminal domain › Fumarate hydratase N-terminal domain › Fumerase | 0.53 | 45.0 | 3.63e-01 | 98.6% | 51.7% |
| 2599 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.53 | 37.0 | 2.94e-01 | 72.9% | 83.7% |
| 3272707 | 327.11.2.39 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_3 | 0.53 | 32.0 | 3.38e-01 | 94.3% | 66.2% |
| 3452826 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 43.0 | 3.59e-01 | 97.1% | 96.3% |
| 4019941 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.52 | 43.0 | 3.04e-01 | 100.0% | 37.7% |
| 3258997 | 301.6.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C | 0.52 | 45.0 | 3.83e-01 | 97.1% | 81.7% |
| 4266054 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.51 | 33.0 | 3.33e-01 | 88.6% | 65.7% |
| 3734895 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 39.0 | 3.43e-01 | 82.9% | 73.3% |
| 3699463 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.51 | 35.0 | 2.59e-01 | 72.9% | 29.8% |
| 2585 | 101.1.2.231 ↗ | alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot | 0.50 | 34.0 | 2.82e-01 | 70.0% | 94.4% |