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SRR1747065_scaffold_0_prodigal-single.1__X__X__00033
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00033
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-99
D2
high
residues 136-245
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3if4A01 | 2.20.20.40 | Mainly Beta › Single Sheet › Anthopleurin-A › Integron cassette protein | 0.53 | 21.0 | 3.03e-01 | 79.1% | 78.0% |
| 2ya0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 25.0 | 2.62e-01 | 79.1% | 49.0% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 30.0 | 3.57e-01 | 100.0% | 89.7% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 29.0 | 3.41e-01 | 100.0% | 84.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3255897 | 212.1.1.34 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFL1 | 0.55 | 48.0 | 3.93e-01 | 100.0% | 95.8% |
| 3390786 | 244.2.1.12 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › CFAP61_dimer | 0.52 | 31.0 | 3.19e-01 | 92.7% | 60.0% |
| 3744940 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.52 | 25.0 | 3.30e-01 | 76.4% | 83.3% |
D3
medium
residues 248-277
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.66 | 51.0 | 4.25e-01 | 93.3% | 47.4% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 44.0 | 2.78e-01 | 100.0% | 13.8% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 2.82e-01 | 83.3% | 71.2% |
| 2yzsA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.59 | 43.0 | 2.64e-01 | 86.7% | 12.3% |
| 7kggC01 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.59 | 45.0 | 3.44e-01 | 96.7% | 57.3% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 43.0 | 2.51e-01 | 100.0% | 8.1% |
| 1gu2A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.57 | 42.0 | 2.97e-01 | 96.7% | 66.9% |
| 4narA02 | 3.90.226.30 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain | 0.56 | 41.0 | 2.66e-01 | 83.3% | 67.7% |
| 2ifcA01 | 1.10.580.10 | Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 | 0.56 | 44.0 | 2.68e-01 | 100.0% | 25.4% |
| 7r2xA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.56 | 41.0 | 2.39e-01 | 90.0% | 23.2% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.56 | 38.0 | 2.40e-01 | 83.3% | 11.4% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 40.0 | 2.41e-01 | 83.3% | 19.0% |
| 3bmxA01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.56 | 38.0 | 2.15e-01 | 70.0% | 5.6% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.56 | 41.0 | 2.38e-01 | 96.7% | 62.8% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 2.25e-01 | 100.0% | 5.9% |
| 1fx2A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 43.0 | 2.62e-01 | 100.0% | 61.7% |
| 1qhbA00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.54 | 46.0 | 2.49e-01 | 100.0% | 52.8% |
| 1w96A02 | 3.90.1770.10 | Alpha Beta › Alpha-Beta Complex › PreATP-grasp fold › PreATP-grasp domain | 0.53 | 41.0 | 3.70e-01 | 90.0% | 57.8% |
| 4bmjA00 | 6.20.250.40 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.53 | 39.0 | 3.21e-01 | 80.0% | 64.5% |
| 2vpzA05 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.53 | 39.0 | 2.66e-01 | 93.3% | 44.7% |
| 3purA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 38.0 | 3.14e-01 | 93.3% | 37.8% |
| 2l4mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.15e-01 | 86.7% | 100.0% |
| 4uwmA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 42.0 | 2.41e-01 | 100.0% | 8.6% |
| 2ewlA00 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 36.0 | 3.26e-01 | 93.3% | 44.6% |
| 3nqpA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 39.0 | 2.21e-01 | 93.3% | 16.0% |
| 1o54A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 36.0 | 2.34e-01 | 96.7% | 26.4% |
| 4dguA02 | 2.60.40.2670 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 35.0 | 2.66e-01 | 90.0% | 31.7% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981704 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.88 | 39.0 | 3.39e-01 | 80.0% | 31.1% |
| 4979956 | 3236.1.1.5 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 | 0.72 | 56.0 | 3.17e-01 | 96.7% | 61.3% |
| 4614874 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.68 | 52.0 | 4.33e-01 | 93.3% | 47.3% |
| 4096474 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.64 | 52.0 | 4.44e-01 | 90.0% | 62.0% |
| 3607216 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 45.0 | 4.13e-01 | 83.3% | 60.0% |
| 4507562 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.61 | 48.0 | 4.13e-01 | 93.3% | 50.9% |
| 5004893 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.59 | 43.0 | 2.43e-01 | 76.7% | 7.3% |
| 3180057 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 42.0 | 4.10e-01 | 83.3% | 72.2% |
| 3612471 | 386.1.1.304 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF31182 | 0.59 | 41.0 | 3.84e-01 | 90.0% | 55.6% |
| 3946553 | 3226.1.1.1 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease | 0.58 | 47.0 | 2.64e-01 | 100.0% | 59.8% |
| 4650684 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.57 | 43.0 | 2.48e-01 | 86.7% | 8.5% |
| 4989836 | 601.7.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 | 0.56 | 44.0 | 2.89e-01 | 100.0% | 72.3% |
| 3787939 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.56 | 45.0 | 2.71e-01 | 100.0% | 27.8% |
| 3690288 | 109.4.1.2628 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, TOR1L1_N, TPR_IMB1, TPR_IPO5 | 0.56 | 41.0 | 2.21e-01 | 96.7% | 3.2% |
| 3963343 | 3987.1.1.0 ↗ | a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain | 0.55 | 46.0 | 3.24e-01 | 96.7% | 30.0% |
| 4048121 | 386.1.1.12 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Sgf11 | 0.55 | 38.0 | 3.05e-01 | 86.7% | 31.8% |
| 3264516 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.55 | 40.0 | 2.38e-01 | 100.0% | 41.6% |
| 3269516 | 102.1.1.41 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › EME1-MUS81_C | 0.55 | 37.0 | 3.05e-01 | 100.0% | 33.7% |
| 3498148 | 376.1.1.75 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Pellino_RING | 0.54 | 37.0 | 2.67e-01 | 100.0% | 19.4% |
| 3445683 | 386.1.1.57 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › TRAFD1-XIAF1_ZnF | 0.54 | 36.0 | 3.05e-01 | 83.3% | 37.3% |
| 3716046 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.54 | 45.0 | 2.48e-01 | 100.0% | 51.1% |
| 3855305 | 386.1.1.57 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › TRAFD1-XIAF1_ZnF | 0.54 | 37.0 | 3.44e-01 | 86.7% | 58.0% |
| 3808474 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 38.0 | 3.12e-01 | 83.3% | 37.3% |
| None | — | 0.53 | 38.0 | 2.42e-01 | 83.3% | 11.1% | |
| 3339038 | 386.1.1.57 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › TRAFD1-XIAF1_ZnF | 0.53 | 37.0 | 3.48e-01 | 83.3% | 56.0% |
| 3734216 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 47.0 | 2.85e-01 | 100.0% | 66.8% |
| 3303606 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 37.0 | 3.46e-01 | 83.3% | 56.0% |
| 3282224 | 5074.1.1.0 ↗ | extended segments › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits | 0.52 | 35.0 | 3.52e-01 | 86.7% | 82.9% |
| 3858940 | 109.4.1.2036 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, Cohesin_HEAT, HEAT_2, PDS5 | 0.52 | 46.0 | 2.48e-01 | 100.0% | 8.5% |
| 3566069 | 375.1.1.186 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NOA36 | 0.51 | 36.0 | 2.77e-01 | 83.3% | 31.6% |