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SRR1747065_scaffold_0_prodigal-single.1__X__X__00045
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00045
Identity
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-88
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.72 | 56.0 | 5.71e-01 | 100.0% | 86.6% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.70 | 52.0 | 5.27e-01 | 100.0% | 80.7% |
| 1kyoF00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.68 | 43.0 | 4.55e-01 | 71.8% | 73.0% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.65 | 51.0 | 4.52e-01 | 100.0% | 58.1% |
| 6jpaE00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.65 | 59.0 | 4.68e-01 | 100.0% | 56.8% |
| 5b2nA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.65 | 54.0 | 3.82e-01 | 98.8% | 29.7% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.65 | 58.0 | 4.78e-01 | 100.0% | 73.2% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.64 | 58.0 | 4.07e-01 | 100.0% | 73.3% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 42.0 | 4.32e-01 | 82.4% | 69.9% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 46.0 | 4.38e-01 | 76.5% | 92.0% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.63 | 55.0 | 4.95e-01 | 98.8% | 70.7% |
| 1w36B02 | 1.10.3170.10 | Mainly Alpha › Orthogonal Bundle › Recbcd, chain B, domain 2 › Recbcd, chain B, domain 2 | 0.62 | 47.0 | 3.73e-01 | 81.2% | 78.8% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.62 | 55.0 | 5.06e-01 | 100.0% | 93.8% |
| 6lw5A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 55.0 | 3.78e-01 | 100.0% | 30.8% |
| 3buxB01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.61 | 55.0 | 4.80e-01 | 100.0% | 82.2% |
| 2c61A00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 45.0 | 2.92e-01 | 98.8% | 16.5% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.59 | 51.0 | 3.50e-01 | 100.0% | 76.2% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 29.0 | 3.91e-01 | 90.6% | 100.0% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 52.0 | 4.90e-01 | 100.0% | 91.3% |
| 1jq5A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.58 | 48.0 | 3.68e-01 | 100.0% | 38.3% |
| 2ptqA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.58 | 50.0 | 3.56e-01 | 100.0% | 47.5% |
| 1gcbA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 50.0 | 3.23e-01 | 100.0% | 28.5% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.56 | 37.0 | 4.02e-01 | 100.0% | 86.6% |
| 3vp7A00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.55 | 41.0 | 3.28e-01 | 88.2% | 40.4% |
| 3we0A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.52 | 42.0 | 3.67e-01 | 89.4% | 75.9% |
| 3tlqA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 40.0 | 3.05e-01 | 90.6% | 75.4% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3409714 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.78 | 44.0 | 4.20e-01 | 75.3% | 48.0% |
| 3222373 | 605.4.1.18 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF29357 | 0.78 | 58.0 | 5.82e-01 | 100.0% | 77.6% |
| 5068844 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.77 | 59.0 | 5.74e-01 | 100.0% | 72.6% |
| 3505840 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.72 | 57.0 | 5.65e-01 | 100.0% | 80.0% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.70 | 47.0 | 4.71e-01 | 75.3% | 68.2% |
| 3686421 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.68 | 48.0 | 4.70e-01 | 72.9% | 70.0% |
| 4990102 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 33.0 | 4.47e-01 | 95.3% | 93.3% |
| 4177935 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.66 | 47.0 | 4.22e-01 | 74.1% | 84.3% |
| 3949980 | 4177.1.1.62 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › EspA_EspE | 0.65 | 58.0 | 4.64e-01 | 100.0% | 82.9% |
| 4972215 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.64 | 46.0 | 3.51e-01 | 76.5% | 33.8% |
| 4567535 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.64 | 52.0 | 3.50e-01 | 85.9% | 75.8% |
| 4874394 | 611.2.1.1 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) › Cbl_N | 0.63 | 56.0 | 4.70e-01 | 100.0% | 58.0% |
| 3365759 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 31.0 | 4.18e-01 | 95.3% | 97.5% |
| 3365178 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 33.0 | 3.69e-01 | 96.5% | 66.2% |
| 3213370 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.62 | 45.0 | 3.25e-01 | 76.5% | 49.8% |
| 3386452 | 5050.1.1.21 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FTR1 | 0.61 | 44.0 | 3.66e-01 | 74.1% | 65.5% |
| 3787709 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 30.0 | 4.20e-01 | 94.1% | 100.0% |
| 5055179 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.61 | 47.0 | 3.56e-01 | 89.4% | 33.8% |
| 3331838 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.60 | 32.0 | 3.95e-01 | 95.3% | 86.0% |
| 3314358 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.60 | 46.0 | 4.61e-01 | 94.1% | 82.4% |
| 3438045 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.59 | 32.0 | 3.63e-01 | 96.5% | 67.7% |
| 3786810 | 2005.1.1.14 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct | 0.59 | 52.0 | 3.69e-01 | 98.8% | 93.3% |
| 3391564 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.58 | 29.0 | 3.57e-01 | 94.1% | 78.0% |
| 3620992 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 32.0 | 3.98e-01 | 95.3% | 92.0% |
| 2417924 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.57 | 47.0 | 4.73e-01 | 95.3% | 91.8% |
| 4026585 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 44.0 | 3.29e-01 | 87.1% | 52.4% |
| 259870 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 2.91e-01 | 83.5% | 28.0% |
| 1270868 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.53 | 41.0 | 2.89e-01 | 83.5% | 27.2% |
| 4951908 | 2007.1.14.32 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › 2-thiour_desulf | 0.53 | 43.0 | 3.10e-01 | 87.1% | 35.3% |
| 5075113 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.52 | 39.0 | 2.97e-01 | 78.8% | 97.0% |
| 3882796 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.52 | 41.0 | 4.18e-01 | 87.1% | 85.9% |
| 3483955 | 386.1.1.6 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 | 0.52 | 35.0 | 3.58e-01 | 70.6% | 80.0% |
| 3693747 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.50 | 39.0 | 3.91e-01 | 89.4% | 82.4% |