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SRR1747065_scaffold_0_prodigal-single.1__X__X__00056
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00056
Identity
- Kingdom:
- phage
Quality
81.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-81
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6r2nA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 45.0 | 3.64e-01 | 82.7% | 37.1% |
| 1e3hA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.66 | 47.0 | 3.30e-01 | 76.0% | 67.3% |
| 3rbyA02 | 2.40.128.310 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain | 0.65 | 37.0 | 3.46e-01 | 84.0% | 44.2% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.64 | 38.0 | 4.23e-01 | 80.0% | 74.6% |
| 3fdwA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.57 | 42.0 | 3.50e-01 | 78.7% | 61.5% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 40.0 | 3.36e-01 | 73.3% | 96.2% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 40.0 | 3.16e-01 | 72.0% | 69.3% |
| 5h4zA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.57 | 42.0 | 3.44e-01 | 77.3% | 60.5% |
| 3wlvA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.56 | 46.0 | 3.06e-01 | 89.3% | 65.7% |
| 6serA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 39.0 | 2.77e-01 | 73.3% | 39.9% |
| 3lh4A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 38.0 | 3.25e-01 | 70.7% | 95.7% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 3.37e-01 | 84.0% | 43.0% |
| 1jnrB02 | 6.20.260.10 | Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain | 0.54 | 42.0 | 4.14e-01 | 85.3% | 84.3% |
| 4meaA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 37.0 | 2.48e-01 | 72.0% | 25.9% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.53 | 36.0 | 2.66e-01 | 70.7% | 66.5% |
| 4opmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 36.0 | 2.47e-01 | 70.7% | 28.4% |
| 3zt9A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 36.0 | 2.77e-01 | 73.3% | 70.3% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 39.0 | 3.35e-01 | 81.3% | 99.2% |
| 4ydzA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 3.16e-01 | 78.7% | 80.7% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 35.0 | 3.57e-01 | 73.3% | 73.0% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 41.0 | 3.67e-01 | 90.7% | 67.0% |
| 2ex2A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 33.0 | 2.29e-01 | 96.0% | 20.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028900 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.79 | 43.0 | 3.18e-01 | 80.0% | 22.9% |
| 4571749 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.74 | 45.0 | 3.40e-01 | 81.3% | 27.9% |
| 5044008 | 2484.1.1.136 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL | 0.70 | 40.0 | 3.15e-01 | 77.3% | 28.0% |
| 4928236 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.70 | 48.0 | 3.02e-01 | 70.7% | 52.5% |
| 3618372 | 2484.1.1.99 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 | 0.67 | 42.0 | 3.57e-01 | 77.3% | 39.2% |
| 3486075 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 45.0 | 4.40e-01 | 77.3% | 65.0% |
| 4954830 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.66 | 46.0 | 3.38e-01 | 72.0% | 28.9% |
| 5020335 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.65 | 48.0 | 3.93e-01 | 82.7% | 45.6% |
| 5063324 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.65 | 46.0 | 3.81e-01 | 80.0% | 44.0% |
| 4325844 | 5085.1.1.2 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 | 0.63 | 48.0 | 2.98e-01 | 82.7% | 68.4% |
| 3387017 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.63 | 46.0 | 3.72e-01 | 81.3% | 42.2% |
| 5009779 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.60 | 42.0 | 3.54e-01 | 80.0% | 44.0% |
| 4969372 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 50.0 | 3.04e-01 | 100.0% | 84.3% |
| 4161565 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 39.0 | 3.60e-01 | 89.3% | 54.7% |
| 3947630 | 2484.1.1.56 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR | 0.56 | 42.0 | 2.64e-01 | 81.3% | 66.3% |
| 3704302 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 41.0 | 3.35e-01 | 78.7% | 91.9% |
| 2698437 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.55 | 38.0 | 3.09e-01 | 73.3% | 54.9% |
| 3499074 | 11.2.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 | 0.54 | 40.0 | 3.17e-01 | 78.7% | 86.3% |
| 3576360 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.54 | 37.0 | 2.91e-01 | 72.0% | 62.9% |
| 3471680 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 45.0 | 3.57e-01 | 90.7% | 67.1% |
| 5073213 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.52 | 43.0 | 3.14e-01 | 93.3% | 38.6% |
| 4338527 | 5.1.5.145 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › eIF2A | 0.52 | 43.0 | 2.59e-01 | 88.0% | 23.7% |
| 4482319 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.52 | 43.0 | 2.56e-01 | 88.0% | 22.2% |
| 4797408 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 35.0 | 3.16e-01 | 74.7% | 71.7% |