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SRR1747065_scaffold_0_prodigal-single.1__X__X__00087

Bact-Vir

SRR1747065_scaffold_0_prodigal-single.1__X__X__00087

Identity

Kingdom:
phage

Quality

55.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-59
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 44.0 3.80e-01 100.0% 44.0%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.63 45.0 3.36e-01 80.0% 77.2%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.06e-01 100.0% 64.0%
4hlnA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 40.0 2.45e-01 100.0% 10.6%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.61 42.0 2.97e-01 100.0% 22.8%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 51.0 3.88e-01 100.0% 44.5%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 46.0 3.71e-01 100.0% 43.6%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 3.68e-01 100.0% 42.5%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 43.0 2.48e-01 100.0% 8.1%
3dfjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 3.66e-01 100.0% 41.6%
5ygbA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 46.0 3.43e-01 100.0% 82.0%
3pesA00 3.30.300.260 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.55 47.0 3.92e-01 100.0% 55.4%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 41.0 3.19e-01 100.0% 36.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.46e-01 100.0% 58.1%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 34.0 2.69e-01 97.8% 26.6%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.40e-01 100.0% 67.4%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.52 35.0 3.14e-01 100.0% 45.1%
4dk0A01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.52 35.0 3.18e-01 100.0% 45.7%
1xi7A00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.51 33.0 3.30e-01 100.0% 63.8%
8dhaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.23e-01 91.1% 72.4%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 41.0 2.62e-01 100.0% 25.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027780 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.73 49.0 4.52e-01 100.0% 53.3%
4257969 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 56.0 4.08e-01 100.0% 38.8%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.64 43.0 3.55e-01 100.0% 37.6%
5011394 4.1.3.0 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP 0.62 44.0 3.96e-01 100.0% 53.8%
3665168 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.60 52.0 3.84e-01 100.0% 47.5%
3792981 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 3.58e-01 100.0% 34.7%
3519884 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 40.0 3.25e-01 100.0% 33.0%
5054112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.42e-01 100.0% 72.3%
3933135 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 47.0 3.29e-01 100.0% 28.6%
3940239 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.57 40.0 3.11e-01 100.0% 32.7%
3941668 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.56 45.0 3.41e-01 100.0% 43.1%
146950 3172.1.1.1 ↗ a+b two layers › Uncharacterized protein gp49 › Uncharacterized protein gp49 › Uncharacterized protein gp49 › YuA_Gp49 0.55 47.0 3.94e-01 100.0% 56.1%
3483121 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 35.0 2.85e-01 100.0% 34.1%
3281289 2004.1.1.94 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.52 39.0 2.70e-01 88.9% 55.3%
3358972 1.1.7.120 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF7271 0.52 42.0 3.66e-01 95.6% 60.0%
3519762 59.1.1.3 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIF_alpha 0.51 38.0 2.95e-01 100.0% 66.7%
3291638 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.93e-01 88.9% 76.9%
5012485 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.51 40.0 3.35e-01 100.0% 50.7%
3719211 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 34.0 3.20e-01 100.0% 58.2%