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SRR1747065_scaffold_0_prodigal-single.1__X__X__00096
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00096
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-194
Domain cluster:
rep: IMGVR_UViG_3300020165_000035-3300020165-Ga0206125_1000061513__D67-129_146-204
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.77 | 52.0 | 5.57e-01 | 100.0% | 79.4% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.76 | 63.0 | 5.67e-01 | 100.0% | 65.2% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.75 | 49.0 | 5.39e-01 | 99.4% | 80.0% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.75 | 45.0 | 5.13e-01 | 100.0% | 79.0% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.73 | 48.0 | 5.31e-01 | 99.4% | 82.0% |
| 2l25A00 | 3.30.2000.20 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.71 | 49.0 | 5.20e-01 | 100.0% | 78.7% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.68 | 30.0 | 3.90e-01 | 97.5% | 70.5% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.67 | 34.0 | 4.11e-01 | 86.9% | 72.6% |
| 3fbqA01 | 2.60.40.1630 | Mainly Beta › Sandwich › Immunoglobulin-like › bacillus anthracis domain | 0.64 | 35.0 | 3.68e-01 | 98.1% | 57.6% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.59 | 36.0 | 4.18e-01 | 98.8% | 85.0% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.58 | 34.0 | 4.12e-01 | 98.1% | 89.9% |
| 2x1wL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 4.16e-01 | 87.5% | 99.0% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 40.0 | 4.30e-01 | 100.0% | 94.9% |
| 3kd4A01 | 2.60.40.3140 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 29.0 | 2.74e-01 | 86.9% | 41.8% |
| 8eisA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.50 | 34.0 | 3.17e-01 | 100.0% | 54.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040945 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.81 | 54.0 | 5.56e-01 | 100.0% | 71.3% |
| 5004177 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.80 | 50.0 | 5.65e-01 | 99.4% | 80.8% |
| 4975576 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.78 | 32.0 | 4.38e-01 | 98.8% | 71.1% |
| 4993809 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.78 | 31.0 | 3.96e-01 | 98.8% | 61.0% |
| 5454 | 304.124.1.2 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 | 0.77 | 52.0 | 5.61e-01 | 100.0% | 80.6% |
| 4883824 | 304.124.1.6 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF5072 | 0.77 | 48.0 | 5.29e-01 | 100.0% | 76.7% |
| 4034595 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.75 | 46.0 | 5.22e-01 | 98.8% | 80.8% |
| 3970985 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.73 | 53.0 | 5.64e-01 | 100.0% | 84.3% |
| 364035 | 304.124.1.1 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U | 0.72 | 49.0 | 5.30e-01 | 100.0% | 82.0% |
| 3589225 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.72 | 47.0 | 5.09e-01 | 100.0% | 77.8% |
| 3802659 | 304.8.1.66 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 | 0.72 | 40.0 | 4.85e-01 | 96.9% | 82.9% |
| 4627501 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.69 | 34.0 | 4.26e-01 | 86.9% | 77.7% |
| 4888780 | 304.124.1.5 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss | 0.67 | 63.0 | 5.48e-01 | 100.0% | 67.9% |
| 3964886 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.65 | 48.0 | 5.05e-01 | 98.8% | 86.4% |
| 3971017 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.64 | 34.0 | 3.98e-01 | 73.8% | 71.8% |
| 3839261 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.64 | 34.0 | 3.90e-01 | 99.4% | 68.1% |
| 3585212 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.64 | 59.0 | 5.34e-01 | 100.0% | 76.3% |
| 4961350 | 242.1.1.10 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › PF26411 | 0.63 | 28.0 | 3.71e-01 | 98.1% | 74.4% |
| 4562028 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.62 | 39.0 | 4.10e-01 | 99.4% | 68.3% |
| 3289660 | 305.1.1.3 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › DUF3000 | 0.62 | 39.0 | 4.43e-01 | 87.5% | 84.2% |
| 4997777 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.61 | 27.0 | 3.61e-01 | 100.0% | 75.3% |
| 3202465 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.61 | 37.0 | 4.23e-01 | 71.9% | 80.0% |
| 3959045 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.61 | 39.0 | 4.38e-01 | 87.5% | 84.2% |
| 4933378 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.59 | 31.0 | 3.77e-01 | 74.4% | 77.1% |
| 5028136 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.58 | 34.0 | 3.98e-01 | 100.0% | 80.9% |
| 5012467 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.58 | 33.0 | 4.02e-01 | 94.4% | 83.6% |
| 3602142 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.58 | 32.0 | 3.86e-01 | 98.8% | 81.9% |
| 1954213 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.56 | 31.0 | 3.22e-01 | 98.8% | 57.9% |
| 2427546 | 12.3.1.30 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PcRGLX_1st | 0.55 | 25.0 | 3.25e-01 | 100.0% | 74.7% |
| 4027054 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.55 | 30.0 | 3.71e-01 | 94.4% | 84.0% |
| 3599587 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 33.0 | 3.15e-01 | 96.2% | 50.8% |
| 3995523 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.53 | 32.0 | 3.23e-01 | 98.8% | 55.9% |
| 3690806 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.53 | 35.0 | 3.86e-01 | 71.9% | 80.7% |
| 2842229 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.53 | 40.0 | 3.10e-01 | 80.0% | 80.5% |
| 3286469 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 42.0 | 4.09e-01 | 97.5% | 78.3% |
| 5027492 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 34.0 | 3.63e-01 | 87.5% | 76.4% |
| 4982195 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.50 | 28.0 | 3.06e-01 | 77.5% | 65.4% |