←Back to structures
SRR1747065_scaffold_0_prodigal-single.1__X__X__00098
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00098
Identity
- Kingdom:
- phage
Quality
73.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-68
Domain cluster:
rep: NC_052660.1__YP_009986652.1__JR325_gp173__00276__D78-150
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bw2A02 | 3.30.70.1740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Bypass-of-forespore C, C-terminal domain | 0.62 | 48.0 | 4.57e-01 | 88.9% | 80.8% |
| 4c92F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 43.0 | 4.07e-01 | 79.4% | 84.4% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.57 | 50.0 | 3.34e-01 | 100.0% | 28.8% |
| 5jenA02 | 3.90.640.20 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase | 0.56 | 41.0 | 3.54e-01 | 77.8% | 99.0% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 46.0 | 3.08e-01 | 95.2% | 25.3% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 44.0 | 3.60e-01 | 98.4% | 49.2% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 44.0 | 3.78e-01 | 100.0% | 98.1% |
| 5fmgF00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 40.0 | 2.81e-01 | 87.3% | 81.3% |
| 3fbkA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 37.0 | 2.87e-01 | 76.2% | 66.7% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 42.0 | 3.22e-01 | 100.0% | 48.6% |
| 2knqA01 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.51 | 42.0 | 3.45e-01 | 100.0% | 60.6% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.39e-01 | 79.4% | 80.2% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.50 | 41.0 | 3.03e-01 | 98.4% | 33.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3038881 | 6019.1.1.1 ↗ | a+b two layers › C-terminal domain of bypass of forespore C, BofC › C-terminal domain of bypass of forespore C, BofC › C-terminal domain of bypass of forespore C, BofC › BofC_C | 0.66 | 53.0 | 4.90e-01 | 87.3% | 81.0% |
| 4177906 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.66 | 43.0 | 2.70e-01 | 88.9% | 13.5% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.57 | 47.0 | 3.62e-01 | 93.7% | 51.3% |
| 3492423 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 47.0 | 2.80e-01 | 90.5% | 85.2% |
| 3760926 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.57 | 49.0 | 3.88e-01 | 100.0% | 54.7% |
| 3574882 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.55 | 46.0 | 3.71e-01 | 98.4% | 53.6% |
| 3792405 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 41.0 | 2.46e-01 | 81.0% | 18.8% |
| 3256903 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.54 | 46.0 | 3.68e-01 | 98.4% | 54.1% |
| 3256387 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.54 | 46.0 | 3.53e-01 | 98.4% | 59.4% |
| 3721041 | 4972.1.1.1 ↗ | beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C | 0.54 | 44.0 | 3.26e-01 | 90.5% | 65.9% |
| 4026069 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.54 | 45.0 | 3.61e-01 | 96.8% | 49.6% |
| 3891228 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.53 | 42.0 | 3.07e-01 | 88.9% | 97.2% |
| 4011611 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 39.0 | 2.63e-01 | 87.3% | 67.7% |
| 3823073 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.50 | 42.0 | 2.66e-01 | 95.2% | 95.4% |
| 3388710 | 62.1.1.1 ↗ | beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase | 0.50 | 37.0 | 2.51e-01 | 81.0% | 52.7% |
D2
high
residues 81-153