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SRR1747065_scaffold_0_prodigal-single.1__X__X__00115
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00115
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-55
Domain cluster:
rep: zinc-ribbon-containing_protein__YP_003407073__Marseillevirus_marseillevirus__694581__D374-426
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24308.2 best | DUF7487 | 47.2 | 3.40e-12 | 100.0% | 24.6% |
D2
medium
residues 64-123
Domain cluster:
rep: pig_ID_445_F78_scaffold_208_curated_prodigal-single.1__X__X__00177__D78-133
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3po3S02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.70 | 35.0 | 3.27e-01 | 90.0% | 37.8% |
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.66 | 57.0 | 4.45e-01 | 98.3% | 56.9% |
| 2ptqA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.65 | 47.0 | 3.01e-01 | 76.7% | 38.1% |
| 3dlsB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 45.0 | 3.83e-01 | 91.7% | 46.9% |
| 1vwxp00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 42.0 | 3.74e-01 | 98.3% | 51.6% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.59 | 49.0 | 3.90e-01 | 93.3% | 81.5% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 43.0 | 4.21e-01 | 81.7% | 72.7% |
| 4bs9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 41.0 | 2.88e-01 | 76.7% | 28.3% |
| 3f8dA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 44.0 | 3.54e-01 | 86.7% | 82.1% |
| 1fl2A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 44.0 | 3.48e-01 | 86.7% | 75.0% |
| 6i4pA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 44.0 | 3.47e-01 | 88.3% | 86.5% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.92e-01 | 81.7% | 80.8% |
| 3iwaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 39.0 | 2.92e-01 | 76.7% | 40.1% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 37.0 | 3.80e-01 | 75.0% | 75.0% |
| 3cgbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 39.0 | 2.84e-01 | 76.7% | 44.6% |
| 7e52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 42.0 | 3.31e-01 | 86.7% | 82.0% |
| 2p04A00 | 3.30.450.260 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain | 0.53 | 39.0 | 3.22e-01 | 76.7% | 59.8% |
| 2kmsA02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.52 | 34.0 | 3.46e-01 | 81.7% | 67.2% |
| 1x3zA04 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 35.0 | 3.73e-01 | 70.0% | 90.7% |
| 2v5mA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 3.75e-01 | 96.7% | 77.9% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.57e-01 | 81.7% | 64.4% |
| 2q22A00 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 42.0 | 3.31e-01 | 90.0% | 53.8% |
| 4n30A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 39.0 | 2.88e-01 | 86.7% | 72.5% |
| 1cb8A03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.51 | 37.0 | 3.18e-01 | 81.7% | 69.1% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 41.0 | 3.56e-01 | 93.3% | 74.0% |
| 1twfI02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.50 | 34.0 | 3.14e-01 | 70.0% | 59.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3733469 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.78 | 43.0 | 3.13e-01 | 91.7% | 22.8% |
| 3253856 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.69 | 48.0 | 3.87e-01 | 93.3% | 36.0% |
| 3589339 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.62 | 44.0 | 3.84e-01 | 76.7% | 80.0% |
| None | — | 0.62 | 53.0 | 3.05e-01 | 100.0% | 49.7% | |
| 4463837 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.58 | 53.0 | 4.31e-01 | 98.3% | 81.9% |
| 4978786 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 50.0 | 2.91e-01 | 100.0% | 12.1% |
| 2642976 | 375.1.1.206 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae, Zn_ribbon_IS1595 | 0.57 | 42.0 | 3.83e-01 | 100.0% | 58.3% |
| 1489340 | 2003.1.9.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins | 0.57 | 41.0 | 2.74e-01 | 76.7% | 22.1% |
| 4269256 | 4.1.1.245 ↗ | beta barrels › SH3 › SH3 › SH3 › SspH | 0.57 | 42.0 | 4.26e-01 | 83.3% | 80.0% |
| 3315597 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.56 | 42.0 | 3.79e-01 | 78.3% | 82.3% |
| 4017985 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.56 | 41.0 | 3.97e-01 | 88.3% | 68.6% |
| 4229831 | 3513.1.1.2 ↗ | a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA › LppA | 0.56 | 48.0 | 3.59e-01 | 100.0% | 79.4% |
| 5032233 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 35.0 | 2.79e-01 | 86.7% | 33.0% |
| 3789931 | 206.1.1.71 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo | 0.55 | 43.0 | 2.78e-01 | 91.7% | 18.2% |
| 3246479 | 206.1.1.71 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo | 0.55 | 42.0 | 2.80e-01 | 91.7% | 22.9% |
| 3883165 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.54 | 47.0 | 4.06e-01 | 100.0% | 76.0% |
| 4221476 | 2003.1.2.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase | 0.54 | 43.0 | 3.03e-01 | 88.3% | 87.1% |
| 3969301 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 3.45e-01 | 91.7% | 75.4% |
| 4948635 | 2003.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox | 0.53 | 43.0 | 3.68e-01 | 90.0% | 91.0% |
| 3842631 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.53 | 37.0 | 3.52e-01 | 73.3% | 67.1% |
| 4533145 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 32.0 | 3.00e-01 | 81.7% | 46.3% |
| 3938389 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.51 | 41.0 | 3.71e-01 | 91.7% | 85.9% |
| 3518155 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 42.0 | 2.70e-01 | 100.0% | 44.3% |
| 3920343 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.51 | 38.0 | 2.85e-01 | 81.7% | 66.0% |
| 3207188 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.51 | 37.0 | 2.59e-01 | 83.3% | 22.3% |
| 3243842 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 40.0 | 3.37e-01 | 90.0% | 81.8% |
D3
medium
residues 144-184
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.82 | 72.0 | 4.71e-01 | 100.0% | 30.8% |
| 3r3pB00 | 3.40.960.10 | Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease | 0.78 | 63.0 | 4.80e-01 | 100.0% | 38.8% |
| 3go5A04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 45.0 | 3.98e-01 | 100.0% | 52.4% |
| 2qvpC00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 46.0 | 2.88e-01 | 92.7% | 22.3% |
| 2nrkA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 44.0 | 3.15e-01 | 100.0% | 25.5% |
| 1wr8A02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.56 | 48.0 | 4.08e-01 | 100.0% | 60.9% |
| 2felA00 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.56 | 44.0 | 2.69e-01 | 95.1% | 60.8% |
| 4dapA02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 41.0 | 3.04e-01 | 100.0% | 30.3% |
| 6u8yK01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.54 | 44.0 | 3.10e-01 | 100.0% | 51.9% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 44.0 | 3.38e-01 | 100.0% | 58.7% |
| 1n8jA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 38.0 | 2.76e-01 | 100.0% | 52.2% |
| 2kumA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 36.0 | 3.44e-01 | 80.5% | 61.4% |
| 3renA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 42.0 | 2.53e-01 | 95.1% | 93.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951545 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.90 | 73.0 | 4.87e-01 | 100.0% | 24.7% |
| 5074968 | 2008.1.1.122 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII-MboI | 0.87 | 79.0 | 5.27e-01 | 100.0% | 29.7% |
| 4027449 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.83 | 69.0 | 5.14e-01 | 100.0% | 37.1% |
| 4963568 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.83 | 69.0 | 5.56e-01 | 100.0% | 48.8% |
| 4026799 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.83 | 68.0 | 4.95e-01 | 100.0% | 33.9% |
| 4336609 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.82 | 72.0 | 5.05e-01 | 100.0% | 36.6% |
| 4620053 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.82 | 72.0 | 4.66e-01 | 100.0% | 25.7% |
| 4029570 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.80 | 68.0 | 4.62e-01 | 100.0% | 27.6% |
| 4030490 | 2008.1.1.124 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6831 | 0.79 | 67.0 | 4.99e-01 | 97.6% | 43.8% |
| 4946865 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.79 | 69.0 | 5.03e-01 | 100.0% | 40.0% |
| 4033230 | 2008.1.1.155 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc | 0.78 | 65.0 | 4.49e-01 | 100.0% | 27.6% |
| 4026721 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.78 | 65.0 | 4.95e-01 | 100.0% | 40.0% |
| 5069856 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.76 | 64.0 | 4.65e-01 | 97.6% | 34.8% |
| 4024292 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.73 | 62.0 | 4.54e-01 | 100.0% | 38.3% |
| 4027801 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 60.0 | 4.54e-01 | 100.0% | 37.3% |
| 5009348 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.72 | 59.0 | 4.49e-01 | 100.0% | 38.1% |
| 5076660 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 57.0 | 4.32e-01 | 100.0% | 41.6% |
| 4028756 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.70 | 56.0 | 3.84e-01 | 100.0% | 24.4% |
| 3695413 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.54 | 38.0 | 2.97e-01 | 78.0% | 50.0% |
| 3599416 | 261.1.1.0 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain | 0.53 | 35.0 | 2.11e-01 | 95.1% | 7.7% |
| 4002647 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.52 | 43.0 | 3.09e-01 | 100.0% | 57.0% |
| 3711878 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 43.0 | 3.25e-01 | 100.0% | 52.4% |
| 4112934 | 837.1.1.1 ↗ | a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal_S16 | 0.50 | 36.0 | 2.90e-01 | 75.6% | 52.0% |