←Back to structures
SRR1747065_scaffold_0_prodigal-single.1__X__X__00173
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00173
Identity
- Kingdom:
- phage
Quality
68.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-106
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 44.0 | 4.28e-01 | 77.4% | 57.7% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.70 | 55.0 | 5.40e-01 | 83.9% | 82.8% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 53.0 | 5.06e-01 | 79.6% | 71.7% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 42.0 | 4.83e-01 | 73.1% | 84.5% |
| 6xpdA01 | 1.20.1510.10 | Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain | 0.66 | 43.0 | 3.29e-01 | 74.2% | 31.2% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.66 | 45.0 | 4.84e-01 | 76.3% | 80.5% |
| 3u0cA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.65 | 48.0 | 3.99e-01 | 79.6% | 47.0% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 54.0 | 4.69e-01 | 88.2% | 78.7% |
| 1dn1B00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 53.0 | 3.90e-01 | 88.2% | 52.7% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.62 | 46.0 | 3.39e-01 | 77.4% | 32.5% |
| 3qweA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.62 | 46.0 | 3.30e-01 | 78.5% | 46.2% |
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 43.0 | 3.80e-01 | 96.8% | 49.3% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.61 | 46.0 | 3.46e-01 | 79.6% | 35.2% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 47.0 | 4.47e-01 | 95.7% | 70.5% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 44.0 | 3.46e-01 | 81.7% | 37.9% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.59 | 40.0 | 4.40e-01 | 72.0% | 86.5% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.59 | 53.0 | 4.91e-01 | 97.8% | 100.0% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.58 | 45.0 | 4.35e-01 | 82.8% | 82.7% |
| 6iknD01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.58 | 45.0 | 3.20e-01 | 81.7% | 53.6% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 50.0 | 4.50e-01 | 92.5% | 87.0% |
| 2xgvA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.57 | 36.0 | 3.18e-01 | 84.9% | 44.4% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 42.0 | 4.10e-01 | 79.6% | 72.5% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 41.0 | 4.28e-01 | 89.2% | 86.2% |
| 5k7fA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 42.0 | 3.70e-01 | 82.8% | 60.1% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 47.0 | 3.97e-01 | 93.5% | 97.3% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 36.0 | 3.76e-01 | 88.2% | 76.8% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.53 | 40.0 | 3.96e-01 | 78.5% | 84.4% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 40.0 | 4.10e-01 | 79.6% | 84.1% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 4.16e-01 | 92.5% | 99.1% |
| 2jaqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 3.19e-01 | 84.9% | 65.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3715173 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.86 | 41.0 | 3.81e-01 | 95.7% | 40.0% |
| 3784491 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 48.0 | 4.35e-01 | 98.9% | 48.3% |
| 3816224 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.77 | 54.0 | 6.08e-01 | 81.7% | 97.1% |
| 3273910 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.73 | 53.0 | 4.91e-01 | 78.5% | 60.9% |
| 3734874 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.72 | 52.0 | 5.89e-01 | 79.6% | 100.0% |
| 3837701 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.72 | 49.0 | 5.60e-01 | 79.6% | 100.0% |
| 5038865 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.71 | 46.0 | 4.38e-01 | 87.1% | 56.4% |
| 3591530 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.71 | 43.0 | 3.83e-01 | 72.0% | 43.8% |
| 4332680 | 3755.3.1.310 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA | 0.68 | 48.0 | 4.01e-01 | 78.5% | 43.9% |
| 3403505 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 51.0 | 5.53e-01 | 83.9% | 100.0% |
| 3973441 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.66 | 44.0 | 4.50e-01 | 87.1% | 70.0% |
| 5023625 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.64 | 45.0 | 4.43e-01 | 93.5% | 68.0% |
| 3794203 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.64 | 50.0 | 5.26e-01 | 84.9% | 95.3% |
| 3638435 | 1073.1.1.14 ↗ | alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › LMBR1 | 0.62 | 49.0 | 4.52e-01 | 81.7% | 69.3% |
| 3518706 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.62 | 46.0 | 4.22e-01 | 79.6% | 60.0% |
| 5049284 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.61 | 46.0 | 4.25e-01 | 79.6% | 82.5% |
| 3704193 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.61 | 46.0 | 3.35e-01 | 79.6% | 30.6% |
| 4606236 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.61 | 52.0 | 5.28e-01 | 91.4% | 100.0% |
| 3443494 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.60 | 49.0 | 3.93e-01 | 90.3% | 86.3% |
| 4259729 | 3755.3.1.295 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 | 0.60 | 44.0 | 3.81e-01 | 76.3% | 74.1% |
| 3411007 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.59 | 46.0 | 4.10e-01 | 87.1% | 59.2% |
| 3539926 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.57 | 51.0 | 3.76e-01 | 94.6% | 72.4% |
| 2391543 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.57 | 51.0 | 3.99e-01 | 97.8% | 93.9% |
| 3455096 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.57 | 45.0 | 3.37e-01 | 83.9% | 56.4% |
| 4014261 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 44.0 | 2.94e-01 | 81.7% | 71.1% |
| 3252533 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.56 | 44.0 | 3.40e-01 | 84.9% | 38.6% |
| 3720203 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.56 | 47.0 | 3.69e-01 | 89.2% | 82.7% |
| 3899930 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.56 | 50.0 | 3.88e-01 | 97.8% | 61.0% |
| 4053952 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.55 | 44.0 | 4.24e-01 | 83.9% | 75.2% |
| 4995732 | 604.32.1.0 ↗ | alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY | 0.55 | 46.0 | 4.04e-01 | 92.5% | 99.3% |
| 3280601 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.54 | 43.0 | 4.03e-01 | 84.9% | 72.2% |
| 4964135 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.53 | 40.0 | 3.90e-01 | 78.5% | 81.0% |
| 3638803 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.50 | 41.0 | 3.53e-01 | 89.2% | 73.3% |