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SRR1747065_scaffold_0_prodigal-single.1__X__X__00182
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00182
Identity
- Kingdom:
- phage
Quality
85.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-73
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08722.18 best | Tn7_TnsA-like_N | 32.7 | 1.20e-07 | 90.8% | 48.8% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4upkA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.74 | 65.0 | 3.92e-01 | 100.0% | 74.1% |
| 4upiA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.73 | 64.0 | 3.81e-01 | 100.0% | 70.3% |
| 1y1pA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.73 | 50.0 | 3.12e-01 | 72.3% | 14.1% |
| 3bt7A02 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.69 | 47.0 | 3.63e-01 | 100.0% | 31.7% |
| 1o98A02 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.69 | 63.0 | 4.11e-01 | 100.0% | 85.3% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 52.0 | 5.44e-01 | 80.0% | 93.1% |
| 2ph7A02 | 3.40.50.10670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › af2093 domain | 0.66 | 44.0 | 3.92e-01 | 100.0% | 46.9% |
| 2bd0A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 58.0 | 3.97e-01 | 98.5% | 97.4% |
| 1hqoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 58.0 | 4.62e-01 | 100.0% | 86.3% |
| 4yxfB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 58.0 | 3.99e-01 | 100.0% | 74.4% |
| 4yacA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 56.0 | 3.87e-01 | 100.0% | 96.9% |
| 3hsiA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.64 | 54.0 | 3.72e-01 | 98.5% | 51.2% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 45.0 | 3.45e-01 | 100.0% | 32.2% |
| 3rkrA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 54.0 | 3.77e-01 | 96.9% | 58.4% |
| 3ctoD00 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.63 | 37.0 | 3.72e-01 | 95.4% | 55.4% |
| 2p3yA02 | 1.10.3360.10 | Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain | 0.63 | 45.0 | 3.74e-01 | 73.8% | 98.1% |
| 1yb1B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 53.0 | 3.69e-01 | 96.9% | 59.1% |
| 3l22A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 54.0 | 3.33e-01 | 98.5% | 42.4% |
| 3tjrA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 55.0 | 3.70e-01 | 100.0% | 86.7% |
| 3afmB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 54.0 | 3.78e-01 | 100.0% | 89.7% |
| 2ehdA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 54.0 | 3.82e-01 | 98.5% | 60.4% |
| 4y9dA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 53.0 | 3.67e-01 | 98.5% | 53.6% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 56.0 | 4.44e-01 | 100.0% | 87.4% |
| 7zs9401 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.59 | 52.0 | 3.58e-01 | 100.0% | 41.3% |
| 3t1iA02 | 3.30.110.110 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Mre11, capping domain | 0.59 | 48.0 | 4.24e-01 | 89.2% | 93.7% |
| 4ospD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 51.0 | 3.48e-01 | 100.0% | 92.7% |
| 7fbhB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.16e-01 | 89.2% | 32.8% |
| 1u9jA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 49.0 | 3.36e-01 | 98.5% | 61.5% |
| 4nv1E01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.57 | 42.0 | 3.05e-01 | 78.5% | 46.8% |
| 2vgnA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.56 | 49.0 | 3.98e-01 | 100.0% | 77.2% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.55 | 49.0 | 3.38e-01 | 100.0% | 59.7% |
| 6uqyB01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 47.0 | 3.20e-01 | 98.5% | 61.0% |
| 1h6vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 47.0 | 3.20e-01 | 93.8% | 56.9% |
| 6h0nB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 48.0 | 2.99e-01 | 98.5% | 53.0% |
| 1onfA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 47.0 | 3.29e-01 | 93.8% | 61.8% |
| 1sb8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 47.0 | 3.28e-01 | 100.0% | 82.1% |
| 2fgyA03 | 3.30.1330.140 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain | 0.51 | 43.0 | 3.61e-01 | 96.9% | 81.2% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999354 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.77 | 51.0 | 3.77e-01 | 100.0% | 27.5% |
| 3216209 | 3532.1.1.0 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase | 0.76 | 54.0 | 3.74e-01 | 73.8% | 80.0% |
| 4437443 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.75 | 56.0 | 4.88e-01 | 78.5% | 61.1% |
| 5077987 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.73 | 63.0 | 4.33e-01 | 96.9% | 28.8% |
| 5056125 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.71 | 60.0 | 4.92e-01 | 98.5% | 56.9% |
| 3964563 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.69 | 58.0 | 4.56e-01 | 95.4% | 50.7% |
| 3412831 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.68 | 50.0 | 3.83e-01 | 78.5% | 72.7% |
| 4945205 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.68 | 61.0 | 3.80e-01 | 100.0% | 83.4% |
| 3397542 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.67 | 60.0 | 3.74e-01 | 100.0% | 64.5% |
| 3979018 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.67 | 59.0 | 4.54e-01 | 100.0% | 66.0% |
| 3589107 | 7515.1.1.15 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest, Metalloenzyme | 0.67 | 60.0 | 3.90e-01 | 100.0% | 82.5% |
| 4971230 | 7569.1.1.0 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like | 0.66 | 44.0 | 3.49e-01 | 100.0% | 33.3% |
| 3969876 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.66 | 54.0 | 3.84e-01 | 96.9% | 27.6% |
| 3618915 | 7515.1.1.19 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase, Phosphodiest | 0.66 | 59.0 | 3.79e-01 | 100.0% | 79.3% |
| 4996743 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.65 | 57.0 | 3.76e-01 | 100.0% | 80.7% |
| 3452345 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.64 | 56.0 | 3.57e-01 | 100.0% | 44.4% |
| 3470427 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.64 | 57.0 | 3.62e-01 | 100.0% | 31.2% |
| 4954737 | 7514.1.1.0 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.64 | 37.0 | 2.82e-01 | 100.0% | 24.2% |
| 5077931 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.64 | 56.0 | 3.49e-01 | 100.0% | 56.1% |
| 3214103 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.64 | 57.0 | 3.54e-01 | 100.0% | 87.6% |
| 3800947 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.63 | 55.0 | 3.49e-01 | 98.5% | 68.4% |
| 3242288 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.63 | 55.0 | 3.98e-01 | 96.9% | 69.4% |
| 3601450 | 7524.1.1.0 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like | 0.63 | 56.0 | 4.07e-01 | 100.0% | 45.5% |
| 3873963 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.63 | 54.0 | 3.52e-01 | 98.5% | 31.9% |
| 5048618 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 53.0 | 4.27e-01 | 98.5% | 59.3% |
| 3493403 | 2002.3.1.6 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › YdjC | 0.62 | 52.0 | 3.34e-01 | 93.8% | 45.1% |
| 3636952 | 2005.1.1.67 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF28717 | 0.62 | 53.0 | 3.73e-01 | 93.8% | 63.0% |
| 3646321 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.61 | 53.0 | 3.37e-01 | 100.0% | 39.7% |
| 3481730 | 2002.3.1.6 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › YdjC | 0.61 | 51.0 | 3.65e-01 | 93.8% | 72.8% |
| 4942922 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.61 | 51.0 | 3.57e-01 | 96.9% | 71.1% |
| 3600315 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 51.0 | 3.31e-01 | 98.5% | 33.0% |
| 3610944 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 48.0 | 4.21e-01 | 95.4% | 57.7% |
| 3803339 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.60 | 52.0 | 3.31e-01 | 98.5% | 59.1% |
| 4979039 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.59 | 53.0 | 3.71e-01 | 100.0% | 45.5% |
| 3444321 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.59 | 51.0 | 3.77e-01 | 96.9% | 64.1% |
| 4978097 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.58 | 49.0 | 3.13e-01 | 96.9% | 34.1% |
| 3190050 | 7579.1.1.9 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase | 0.58 | 48.0 | 3.17e-01 | 98.5% | 35.9% |
| 4927024 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.58 | 48.0 | 3.82e-01 | 98.5% | 62.7% |
| 4967672 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.57 | 49.0 | 3.85e-01 | 95.4% | 55.0% |
| 3789513 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.57 | 50.0 | 3.43e-01 | 100.0% | 73.5% |
| 4567363 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.56 | 47.0 | 3.85e-01 | 100.0% | 76.3% |
| 2393176 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.56 | 49.0 | 3.17e-01 | 98.5% | 53.2% |
| 3198595 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.55 | 47.0 | 3.05e-01 | 100.0% | 42.9% |
| 5004805 | 2003.1.1.72 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd | 0.55 | 47.0 | 3.07e-01 | 98.5% | 54.0% |
| 3176412 | 2005.2.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF | 0.54 | 46.0 | 3.10e-01 | 100.0% | 48.6% |
| 3587836 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.54 | 46.0 | 3.02e-01 | 100.0% | 41.3% |
| 5051043 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.53 | 45.0 | 3.11e-01 | 100.0% | 93.3% |
| 4940146 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.53 | 45.0 | 2.93e-01 | 100.0% | 37.8% |
| 5040283 | 2006.1.1.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD | 0.52 | 44.0 | 3.09e-01 | 100.0% | 62.5% |