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SRR1747065_scaffold_0_prodigal-single.1__X__X__00220
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00220
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-285
Domain cluster:
rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00220__D6-190
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.75 | 60.0 | 6.49e-01 | 100.0% | 97.2% |
| 3hvnA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.74 | 15.0 | 3.67e-01 | 78.2% | 84.9% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.70 | 15.0 | 2.85e-01 | 74.7% | 59.0% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.69 | 13.0 | 2.97e-01 | 79.4% | 68.3% |
| 2e2dC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 24.0 | 4.03e-01 | 78.6% | 98.9% |
| 4damC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 24.0 | 3.92e-01 | 79.8% | 97.0% |
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.60 | 14.0 | 2.96e-01 | 79.4% | 86.8% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 23.0 | 3.74e-01 | 77.8% | 94.1% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 24.0 | 3.63e-01 | 78.6% | 89.2% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 23.0 | 3.70e-01 | 77.8% | 99.0% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 23.0 | 3.36e-01 | 78.6% | 95.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 378 | 2.1.1.45 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 | 0.75 | 58.0 | 6.43e-01 | 98.1% | 97.6% |
| 4995733 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 52.0 | 5.98e-01 | 100.0% | 99.5% |
| 3825482 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.62 | 16.0 | 2.79e-01 | 78.2% | 63.5% |
| 3495218 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.62 | 14.0 | 3.24e-01 | 78.6% | 94.0% |
| 3768529 | 11.1.1.15 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD | 0.60 | 18.0 | 2.73e-01 | 80.2% | 58.3% |
| None | — | 0.59 | 15.0 | 2.12e-01 | 81.7% | 40.8% | |
| 3543052 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.59 | 18.0 | 2.75e-01 | 80.2% | 60.9% |
| 3262236 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 19.0 | 3.05e-01 | 79.4% | 72.4% |
| 5011691 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 17.0 | 2.55e-01 | 79.4% | 58.3% |
| 3426315 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.57 | 15.0 | 2.53e-01 | 79.4% | 61.1% |
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 24.0 | 3.81e-01 | 79.4% | 97.2% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 24.0 | 3.64e-01 | 79.0% | 90.7% |
| 2165137 | 5084.1.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › FHBP_C | 0.55 | 21.0 | 2.85e-01 | 79.0% | 62.6% |
| 2035523 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.55 | 24.0 | 3.68e-01 | 79.8% | 96.4% |
| 3690510 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.55 | 23.0 | 3.59e-01 | 79.4% | 94.5% |
| 3215667 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.54 | 25.0 | 3.62e-01 | 79.8% | 92.5% |
| 3716709 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 24.0 | 3.51e-01 | 80.2% | 91.9% |
| 3634241 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 16.0 | 2.75e-01 | 80.9% | 81.2% |