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SRR1747065_scaffold_0_prodigal-single.1__X__X__00243

Bact-Vir

SRR1747065_scaffold_0_prodigal-single.1__X__X__00243

Identity

Kingdom:
phage

Quality

85.2 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-135
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 40.0 5.18e-01 88.8% 100.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 39.0 4.88e-01 94.0% 92.9%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 40.0 4.47e-01 96.3% 83.7%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 44.0 3.80e-01 96.3% 49.3%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 33.0 3.14e-01 96.3% 49.4%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 43.0 4.46e-01 98.5% 92.1%
4dguA02 2.60.40.2670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 31.0 3.51e-01 92.5% 79.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 42.0 5.07e-01 94.8% 92.9%
4934755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 36.0 4.86e-01 90.3% 97.1%
5037228 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.69 35.0 4.79e-01 88.8% 100.0%
5048306 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 25.0 4.21e-01 85.8% 100.0%
4668224 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 23.0 4.13e-01 85.1% 97.8%
5040678 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 24.0 4.00e-01 94.0% 100.0%
4974745 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.58 45.0 3.96e-01 96.3% 56.3%
4028378 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 44.0 4.55e-01 96.3% 83.8%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 43.0 4.52e-01 96.3% 87.5%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 45.0 4.57e-01 96.3% 86.2%
4078003 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 44.0 4.55e-01 96.3% 86.2%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.56 44.0 4.54e-01 96.3% 86.2%
3249352 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 44.0 4.52e-01 96.3% 86.2%
3788630 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 45.0 4.56e-01 96.3% 85.9%
3639466 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 44.0 4.28e-01 96.3% 77.2%
3782292 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.55 32.0 3.99e-01 88.1% 96.2%
4932882 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 46.0 4.64e-01 97.0% 89.6%
4536848 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 42.0 4.31e-01 98.5% 86.2%
1157717 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.51 41.0 4.23e-01 98.5% 89.2%
3802808 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.50 44.0 4.35e-01 96.3% 87.6%
3691426 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.50 44.0 4.00e-01 93.3% 89.7%