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SRR1747065_scaffold_0_prodigal-single.1__X__X__00276
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00276
Identity
- Kingdom:
- phage
Quality
59.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-138
D2
medium
residues 183-251
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ffzA04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.59 | 44.0 | 3.25e-01 | 79.7% | 55.6% |
| 6grqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 43.0 | 3.95e-01 | 97.1% | 60.2% |
| 2vsdA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 42.0 | 3.84e-01 | 98.6% | 57.0% |
| 2if7A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 51.0 | 4.46e-01 | 97.1% | 67.3% |
| 7ylsB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.58 | 41.0 | 3.59e-01 | 75.4% | 94.4% |
| 3ed4A02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 48.0 | 4.52e-01 | 91.3% | 80.7% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 42.0 | 2.93e-01 | 78.3% | 99.6% |
| 2pkaA00 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 34.0 | 3.29e-01 | 89.9% | 51.2% |
| 4lqzA00 | 2.40.128.570 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 | 0.56 | 47.0 | 3.83e-01 | 92.8% | 96.9% |
| 2mhdA00 | 2.40.128.370 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 45.0 | 3.94e-01 | 92.8% | 90.9% |
| 2q5fA02 | 2.60.200.30 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 | 0.56 | 47.0 | 3.79e-01 | 94.2% | 86.6% |
| 3i9v700 | 3.30.920.80 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 | 0.55 | 42.0 | 3.48e-01 | 84.1% | 87.4% |
| 1zxuA00 | 2.40.160.200 | Mainly Beta › Beta Barrel › Porin › LURP1-related | 0.55 | 42.0 | 3.24e-01 | 84.1% | 43.2% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 48.0 | 4.30e-01 | 100.0% | 76.3% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 32.0 | 3.37e-01 | 92.8% | 64.1% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 40.0 | 2.81e-01 | 78.3% | 56.9% |
| 3vv1A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 3.64e-01 | 97.1% | 70.9% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 45.0 | 3.18e-01 | 98.6% | 83.7% |
| 4mboA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 3.08e-01 | 91.3% | 36.4% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.52 | 44.0 | 2.80e-01 | 100.0% | 96.5% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 44.0 | 3.14e-01 | 98.6% | 85.1% |
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 31.0 | 3.27e-01 | 92.8% | 64.1% |
| 2gumB03 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.52 | 39.0 | 3.29e-01 | 81.2% | 99.2% |
| 1cczA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.84e-01 | 94.2% | 65.6% |
| 3afoB02 | 2.60.200.30 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 | 0.52 | 42.0 | 3.47e-01 | 92.8% | 86.1% |
| 1maiA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 41.0 | 3.61e-01 | 94.2% | 86.6% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 42.0 | 3.15e-01 | 100.0% | 87.7% |
| 2oxgC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.71e-01 | 97.1% | 61.4% |
| 5f7uA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.51 | 36.0 | 2.66e-01 | 78.3% | 97.3% |
| 3f42A00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.51 | 38.0 | 3.42e-01 | 92.8% | 59.1% |
| 6dw1A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.50 | 38.0 | 2.87e-01 | 88.4% | 69.5% |
| 1bakA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 35.0 | 2.95e-01 | 72.5% | 42.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3740996 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.78 | 46.0 | 3.64e-01 | 97.1% | 30.4% |
| 3857730 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.77 | 47.0 | 3.69e-01 | 95.7% | 29.7% |
| 3556872 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.73 | 44.0 | 3.47e-01 | 95.7% | 29.0% |
| 3721899 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.71 | 47.0 | 3.63e-01 | 98.6% | 31.3% |
| 3632437 | 76.1.1.7 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 | 0.68 | 47.0 | 3.46e-01 | 95.7% | 28.6% |
| 4680896 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 46.0 | 4.17e-01 | 97.1% | 54.4% |
| 3204420 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.67 | 51.0 | 3.79e-01 | 97.1% | 32.6% |
| 3635751 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.65 | 45.0 | 3.71e-01 | 95.7% | 40.0% |
| 4985409 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.64 | 45.0 | 3.45e-01 | 72.5% | 77.4% |
| 3909007 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 57.0 | 4.84e-01 | 100.0% | 68.2% |
| 2458442 | 11.1.1.62 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Peptidase_C25_C | 0.63 | 43.0 | 4.08e-01 | 95.7% | 59.8% |
| 3637853 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.60 | 51.0 | 3.61e-01 | 97.1% | 31.2% |
| 4570038 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.60 | 45.0 | 2.50e-01 | 79.7% | 64.9% |
| 3894531 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.60 | 52.0 | 3.91e-01 | 95.7% | 46.7% |
| 4119187 | 3735.1.1.12 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.60 | 46.0 | 2.54e-01 | 81.2% | 40.9% |
| 3455239 | 292.2.1.12 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Calmod_bind_C | 0.59 | 47.0 | 5.02e-01 | 91.3% | 98.3% |
| 3176570 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.58 | 38.0 | 2.95e-01 | 92.8% | 30.7% |
| 3462961 | 5.1.4.122 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 | 0.55 | 41.0 | 2.80e-01 | 84.1% | 21.6% |
| 3279701 | 319.1.1.16 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 | 0.55 | 38.0 | 3.60e-01 | 92.8% | 61.3% |
| 5022659 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.55 | 40.0 | 3.94e-01 | 97.1% | 73.3% |
| 4970898 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 3.88e-01 | 98.6% | 61.0% |
| 166794 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.53 | 44.0 | 3.25e-01 | 100.0% | 86.6% |
| 3277614 | 319.1.1.16 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 | 0.53 | 34.0 | 3.41e-01 | 94.2% | 64.3% |
| 3460631 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.53 | 45.0 | 3.59e-01 | 97.1% | 66.9% |
| 3510295 | 206.1.3.30 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › SPN1_m3Gcap_bd | 0.52 | 37.0 | 2.75e-01 | 81.2% | 56.9% |
| 4483173 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.51 | 31.0 | 3.19e-01 | 92.8% | 63.1% |
| 4970563 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.62e-01 | 97.1% | 60.0% |
| 3815461 | 11.1.4.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PF30918 | 0.51 | 45.0 | 3.75e-01 | 98.6% | 60.8% |
| 4967383 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.51 | 43.0 | 3.21e-01 | 97.1% | 85.3% |
| 3278284 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.51 | 41.0 | 3.66e-01 | 97.1% | 61.0% |
| 3380828 | 5.1.3.131 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Det1 | 0.51 | 40.0 | 2.54e-01 | 91.3% | 41.8% |
| 3666517 | 11.1.1.1079 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30918 | 0.51 | 45.0 | 3.79e-01 | 98.6% | 63.5% |
| 4243623 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.51 | 39.0 | 2.81e-01 | 82.6% | 98.5% |