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SRR1747065_scaffold_0_prodigal-single.1__X__X__00356
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00356
Identity
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 87-160
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.67 | 60.0 | 4.83e-01 | 100.0% | 72.7% |
| 2ougA00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.65 | 47.0 | 3.86e-01 | 77.0% | 41.1% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.60 | 41.0 | 2.92e-01 | 71.6% | 47.7% |
| 3ttqA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 46.0 | 3.27e-01 | 87.8% | 71.8% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.59 | 50.0 | 4.71e-01 | 100.0% | 78.7% |
| 2cpmA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.59 | 44.0 | 4.20e-01 | 100.0% | 67.0% |
| 3iabB01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.58 | 51.0 | 4.69e-01 | 100.0% | 81.8% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 47.0 | 3.44e-01 | 95.9% | 35.2% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 50.0 | 3.74e-01 | 100.0% | 48.4% |
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 46.0 | 3.48e-01 | 95.9% | 39.1% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 45.0 | 4.30e-01 | 97.3% | 79.5% |
| 3d3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 47.0 | 3.71e-01 | 100.0% | 48.4% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 3.42e-01 | 95.9% | 40.8% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 3.44e-01 | 94.6% | 42.1% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 40.0 | 3.64e-01 | 82.4% | 70.5% |
| 3mb5A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 44.0 | 3.35e-01 | 95.9% | 50.8% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 43.0 | 3.39e-01 | 100.0% | 41.1% |
| 2p8jA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 3.33e-01 | 100.0% | 48.5% |
| 2qzbA00 | 2.60.460.10 | Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain | 0.51 | 42.0 | 3.48e-01 | 95.9% | 100.0% |
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.51 | 38.0 | 2.85e-01 | 81.1% | 37.8% |
| 7w3rB01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 43.0 | 2.93e-01 | 100.0% | 84.6% |
| 2p35A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 3.32e-01 | 97.3% | 41.4% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.50 | 35.0 | 2.63e-01 | 100.0% | 29.2% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4351239 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.72 | 37.0 | 3.06e-01 | 86.5% | 28.5% |
| 3077668 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.69 | 51.0 | 4.50e-01 | 78.4% | 57.8% |
| 3190012 | 883.1.1.12 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF5923 | 0.68 | 35.0 | 2.47e-01 | 82.4% | 16.4% |
| 5052927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 57.0 | 4.72e-01 | 97.3% | 60.7% |
| 4117256 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.60 | 52.0 | 4.40e-01 | 100.0% | 67.7% |
| 4396101 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.59 | 44.0 | 2.75e-01 | 81.1% | 53.4% |
| 3967659 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.59 | 49.0 | 3.75e-01 | 98.6% | 37.9% |
| 4027856 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.58 | 30.0 | 3.01e-01 | 74.3% | 43.8% |
| 4972556 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 52.0 | 4.94e-01 | 98.6% | 95.3% |
| 3515741 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 51.0 | 4.73e-01 | 100.0% | 87.4% |
| 4336917 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.56 | 49.0 | 3.63e-01 | 97.3% | 39.0% |
| 4088089 | 304.48.1.39 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N | 0.56 | 42.0 | 2.78e-01 | 79.7% | 63.2% |
| 3994209 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.56 | 43.0 | 2.89e-01 | 86.5% | 52.0% |
| 4260992 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.56 | 47.0 | 3.51e-01 | 94.6% | 38.9% |
| 3657448 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.55 | 45.0 | 3.74e-01 | 100.0% | 48.6% |
| 4635290 | 4967.1.1.25 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N | 0.55 | 42.0 | 2.61e-01 | 81.1% | 50.5% |
| 4024350 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 50.0 | 3.99e-01 | 98.6% | 62.9% |
| None | — | 0.55 | 46.0 | 3.52e-01 | 94.6% | 40.0% | |
| 347023 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.55 | 46.0 | 3.48e-01 | 95.9% | 38.2% |
| 5004023 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.55 | 46.0 | 3.54e-01 | 95.9% | 40.6% |
| 3602563 | 2007.1.5.14 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › PF27247 | 0.55 | 46.0 | 3.93e-01 | 94.6% | 60.0% |
| None | — | 0.55 | 47.0 | 3.52e-01 | 97.3% | 39.7% | |
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.55 | 29.0 | 2.17e-01 | 79.7% | 18.0% |
| 4964256 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 50.0 | 4.18e-01 | 100.0% | 60.0% |
| 3592296 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 33.0 | 2.86e-01 | 100.0% | 36.7% |
| None | — | 0.54 | 45.0 | 3.56e-01 | 100.0% | 40.2% | |
| 4990821 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.54 | 46.0 | 3.15e-01 | 95.9% | 29.8% |
| 4938781 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.54 | 45.0 | 3.57e-01 | 95.9% | 43.0% |
| None | — | 0.54 | 46.0 | 3.48e-01 | 95.9% | 40.5% | |
| 3255418 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.54 | 43.0 | 2.73e-01 | 98.6% | 16.6% |
| 4986411 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.54 | 45.0 | 3.41e-01 | 95.9% | 37.9% |
| 1903993 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.53 | 43.0 | 3.42e-01 | 95.9% | 40.6% |
| 3740450 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.53 | 46.0 | 4.33e-01 | 97.3% | 86.7% |
| None | — | 0.52 | 42.0 | 3.34e-01 | 95.9% | 40.6% | |
| 3552097 | 11.1.1.242 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RET_CLD3 | 0.52 | 41.0 | 3.46e-01 | 89.2% | 58.5% |
| 9346 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.52 | 43.0 | 3.38e-01 | 100.0% | 40.9% |
| 4635289 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 46.0 | 2.90e-01 | 100.0% | 51.0% |
| 5034346 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.52 | 40.0 | 2.67e-01 | 87.8% | 38.5% |
| 3513729 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 44.0 | 2.64e-01 | 100.0% | 40.5% |
| 4961364 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.51 | 42.0 | 3.35e-01 | 98.6% | 42.9% |
| 3761138 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 36.0 | 3.08e-01 | 86.5% | 47.0% |
| 4966168 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 42.0 | 2.80e-01 | 95.9% | 28.4% |
| 3645375 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.51 | 43.0 | 4.06e-01 | 98.6% | 87.2% |
| 3665260 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 35.0 | 2.62e-01 | 75.7% | 30.2% |
D2
medium
residues 21-70