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SRR1747065_scaffold_0_prodigal-single.1__X__X__00360
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00360
Identity
- Kingdom:
- phage
Quality
57.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 74-146
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wvvB01 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.76 | 45.0 | 5.43e-01 | 100.0% | 91.7% |
| 6fnnB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.60 | 49.0 | 3.96e-01 | 98.6% | 45.8% |
| 4rcjA01 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.58 | 51.0 | 4.14e-01 | 100.0% | 61.6% |
| 4rcmB00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.57 | 50.0 | 3.94e-01 | 100.0% | 57.2% |
| 1t62B00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.56 | 50.0 | 3.87e-01 | 100.0% | 76.7% |
| 2p3hA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.55 | 46.0 | 4.21e-01 | 93.2% | 69.4% |
| 2hd9A00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.55 | 47.0 | 3.87e-01 | 100.0% | 66.2% |
| 4k4kA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.55 | 38.0 | 3.23e-01 | 86.3% | 41.7% |
| 2gbsA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.54 | 48.0 | 3.86e-01 | 100.0% | 60.7% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.54 | 47.0 | 4.34e-01 | 100.0% | 93.7% |
| 4ekjA01 | 2.60.40.1500 | Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 | 0.54 | 44.0 | 3.48e-01 | 90.4% | 95.5% |
| 2q07A03 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.54 | 41.0 | 4.30e-01 | 100.0% | 95.5% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.54 | 42.0 | 3.67e-01 | 100.0% | 54.3% |
| 3cr8A01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.54 | 47.0 | 3.86e-01 | 100.0% | 73.8% |
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 42.0 | 3.67e-01 | 90.4% | 90.7% |
| 1q7hA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.53 | 44.0 | 4.29e-01 | 100.0% | 84.9% |
| 5zveA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.52 | 45.0 | 4.30e-01 | 100.0% | 84.9% |
| 3r90A00 | 3.10.400.20 | Alpha Beta › Roll › Sulfate adenylyltransferase › | 0.52 | 44.0 | 3.40e-01 | 100.0% | 41.1% |
| 2apoA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.52 | 44.0 | 4.03e-01 | 100.0% | 72.7% |
| 4q1tB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 44.0 | 3.12e-01 | 100.0% | 37.6% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.51 | 44.0 | 3.42e-01 | 100.0% | 48.9% |
| 2cx0A02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.51 | 43.0 | 4.21e-01 | 100.0% | 94.0% |
| 1sqwA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.50 | 43.0 | 4.16e-01 | 100.0% | 88.0% |
| 2g5xA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.50 | 43.0 | 3.30e-01 | 97.3% | 41.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4105843 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.63 | 45.0 | 4.97e-01 | 100.0% | 100.0% |
| 4469154 | 2003.1.5.89 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Anamorsin_N | 0.63 | 46.0 | 3.74e-01 | 79.5% | 61.4% |
| 4628817 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.61 | 45.0 | 3.25e-01 | 78.1% | 38.6% |
| 4970748 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.61 | 45.0 | 4.18e-01 | 80.8% | 80.0% |
| 4323662 | 4100.1.1.8 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF5395 | 0.61 | 44.0 | 4.30e-01 | 78.1% | 97.5% |
| 3174972 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.60 | 50.0 | 3.72e-01 | 100.0% | 35.4% |
| 4957568 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.59 | 51.0 | 4.91e-01 | 98.6% | 96.5% |
| 4169267 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.59 | 52.0 | 4.20e-01 | 100.0% | 62.8% |
| 5063788 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.58 | 50.0 | 3.86e-01 | 100.0% | 58.6% |
| 3579362 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.55 | 41.0 | 3.62e-01 | 100.0% | 53.6% |
| 3931572 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.55 | 44.0 | 3.77e-01 | 90.4% | 94.4% |
| 3453949 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 46.0 | 3.13e-01 | 100.0% | 28.1% |
| 4961858 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.55 | 47.0 | 3.82e-01 | 100.0% | 61.3% |
| 21948 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.55 | 48.0 | 3.96e-01 | 100.0% | 64.7% |
| 4930748 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 45.0 | 3.40e-01 | 100.0% | 36.4% |
| 4280880 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.54 | 39.0 | 4.12e-01 | 100.0% | 90.8% |
| 3701932 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 46.0 | 3.97e-01 | 100.0% | 65.0% |
| 5005633 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.53 | 43.0 | 4.05e-01 | 93.2% | 80.0% |
| None | — | 0.53 | 45.0 | 4.39e-01 | 100.0% | 90.6% | |
| 3202775 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.53 | 44.0 | 4.17e-01 | 100.0% | 90.5% |
| 4928178 | 1.1.9.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 | 0.53 | 45.0 | 3.47e-01 | 100.0% | 41.8% |
| 3619980 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 38.0 | 3.46e-01 | 100.0% | 53.6% |
| 3300189 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.52 | 44.0 | 4.22e-01 | 100.0% | 87.8% |
| 3394318 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.52 | 44.0 | 4.27e-01 | 100.0% | 95.3% |
| 4632972 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.52 | 41.0 | 4.27e-01 | 100.0% | 95.6% |
| 4932507 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.52 | 38.0 | 3.44e-01 | 79.5% | 68.6% |
| 3414159 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.52 | 44.0 | 4.24e-01 | 100.0% | 89.4% |
| 5079425 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.52 | 45.0 | 4.23e-01 | 100.0% | 81.1% |
| 187 | 1.1.9.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 | 0.51 | 41.0 | 4.15e-01 | 100.0% | 91.7% |
| 3511994 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.51 | 43.0 | 4.21e-01 | 100.0% | 88.2% |
| 4928397 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.51 | 44.0 | 3.76e-01 | 100.0% | 58.9% |
| 5016306 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.51 | 44.0 | 4.15e-01 | 100.0% | 91.1% |
| 168 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.51 | 43.0 | 4.05e-01 | 100.0% | 83.9% |
| 3709967 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.50 | 43.0 | 3.63e-01 | 100.0% | 67.7% |
D2
high
residues 226-293
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e69A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.68 | 48.0 | 3.11e-01 | 75.0% | 31.3% |
| 2dcnA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.66 | 49.0 | 3.20e-01 | 79.4% | 36.4% |
| 3ljsA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.66 | 48.0 | 3.11e-01 | 77.9% | 33.2% |
| 3kihC01 | 2.20.25.510 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.66 | 34.0 | 4.28e-01 | 77.9% | 97.1% |
| 3ie7A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.65 | 47.0 | 3.06e-01 | 76.5% | 37.2% |
| 3otxB01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.65 | 47.0 | 3.16e-01 | 77.9% | 46.2% |
| 3pl2A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 48.0 | 3.25e-01 | 82.4% | 53.6% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 36.0 | 3.17e-01 | 83.8% | 36.3% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 46.0 | 3.03e-01 | 77.9% | 37.9% |
| 3h49B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 45.0 | 2.99e-01 | 76.5% | 36.5% |
| 4du5B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 46.0 | 3.09e-01 | 80.9% | 43.7% |
| 1tyyA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.62 | 46.0 | 3.02e-01 | 77.9% | 39.4% |
| 3hrsA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.62 | 40.0 | 3.93e-01 | 100.0% | 59.2% |
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.62 | 46.0 | 2.99e-01 | 79.4% | 39.7% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 36.0 | 3.77e-01 | 97.1% | 65.0% |
| 3iq0A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 44.0 | 2.90e-01 | 77.9% | 36.8% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.61 | 35.0 | 3.65e-01 | 100.0% | 60.0% |
| 3b1nA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.60 | 43.0 | 2.83e-01 | 76.5% | 44.1% |
| 4kv7A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 41.0 | 3.15e-01 | 73.5% | 33.1% |
| 3ikhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 45.0 | 2.97e-01 | 83.8% | 37.4% |
| 1dq3A02 | 3.30.160.90 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 34.0 | 3.30e-01 | 76.5% | 51.3% |
| 3bf5A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 46.0 | 3.18e-01 | 86.8% | 31.1% |
| 3ewmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 44.0 | 2.95e-01 | 85.3% | 38.8% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 33.0 | 3.71e-01 | 82.4% | 78.7% |
| 5hy7B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 42.0 | 2.63e-01 | 80.9% | 93.7% |
| 3go6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 41.0 | 2.76e-01 | 80.9% | 43.9% |
| 3nvqA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 43.0 | 2.61e-01 | 85.3% | 36.7% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.55 | 35.0 | 3.49e-01 | 91.2% | 62.0% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 42.0 | 3.44e-01 | 82.4% | 50.0% |
| 4yshA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.54 | 38.0 | 2.97e-01 | 73.5% | 99.3% |
| 4ihqA01 | 3.30.450.370 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 37.0 | 2.93e-01 | 75.0% | 33.3% |
| 2lw7A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 39.0 | 3.42e-01 | 82.4% | 86.0% |
| 1nqzA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 42.0 | 3.10e-01 | 86.8% | 78.4% |
| 1x9zA01 | 3.30.1540.20 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain | 0.52 | 42.0 | 3.84e-01 | 89.7% | 69.9% |
| 3viuA04 | 3.90.650.10 | Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain | 0.52 | 39.0 | 3.03e-01 | 85.3% | 84.4% |
| 1q5qH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 36.0 | 2.62e-01 | 75.0% | 93.8% |
| 5ve3A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.51 | 43.0 | 3.77e-01 | 100.0% | 95.5% |
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.51 | 40.0 | 3.49e-01 | 85.3% | 57.5% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 40.0 | 2.70e-01 | 88.2% | 93.4% |
| 6ui4A02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.15e-01 | 88.2% | 75.5% |
| 1q7fB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 39.0 | 2.74e-01 | 91.2% | 78.7% |
| 5umbA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 41.0 | 3.05e-01 | 89.7% | 49.7% |
| 1br2A04 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.33e-01 | 100.0% | 92.2% |
| 1qhuA01 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.50 | 39.0 | 2.96e-01 | 88.2% | 89.1% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 39.0 | 2.59e-01 | 88.2% | 92.8% |
| 1ts9A00 | 2.30.30.210 | Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 | 0.50 | 42.0 | 3.84e-01 | 98.5% | 84.7% |
| 2h4oA00 | 6.20.120.10 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 31.0 | 3.26e-01 | 89.7% | 67.7% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039505 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.76 | 55.0 | 5.99e-01 | 76.5% | 100.0% |
| 4965868 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.72 | 41.0 | 4.27e-01 | 97.1% | 60.3% |
| 3979269 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.70 | 50.0 | 3.30e-01 | 75.0% | 36.0% |
| 3944874 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.69 | 51.0 | 3.31e-01 | 79.4% | 38.1% |
| 4261362 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.69 | 38.0 | 3.83e-01 | 86.8% | 51.4% |
| 4030832 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.69 | 51.0 | 3.37e-01 | 80.9% | 40.7% |
| 4991145 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.68 | 48.0 | 3.30e-01 | 76.5% | 40.0% |
| 1255408 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.67 | 48.0 | 3.13e-01 | 75.0% | 32.7% |
| 3594533 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.66 | 52.0 | 4.25e-01 | 88.2% | 73.3% |
| 4990710 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.66 | 48.0 | 3.21e-01 | 79.4% | 39.0% |
| 4342110 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.66 | 37.0 | 3.69e-01 | 86.8% | 50.7% |
| 4940501 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.65 | 38.0 | 3.95e-01 | 97.1% | 60.0% |
| 4994394 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.65 | 50.0 | 3.29e-01 | 82.4% | 47.0% |
| 4609520 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.65 | 48.0 | 3.20e-01 | 80.9% | 42.4% |
| 3550262 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.65 | 48.0 | 3.04e-01 | 79.4% | 36.0% |
| 3977922 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.64 | 47.0 | 3.13e-01 | 79.4% | 38.7% |
| 4656461 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.63 | 37.0 | 3.92e-01 | 97.1% | 65.0% |
| 5036621 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 35.0 | 3.85e-01 | 97.1% | 65.5% |
| 4963446 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 39.0 | 4.04e-01 | 92.6% | 70.8% |
| 3943829 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.60 | 45.0 | 2.99e-01 | 80.9% | 37.9% |
| 3624033 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.59 | 45.0 | 3.88e-01 | 83.8% | 90.4% |
| 4968844 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.59 | 37.0 | 3.55e-01 | 92.6% | 53.8% |
| 3972714 | 5.1.4.49 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PSII_BNR | 0.59 | 41.0 | 2.68e-01 | 72.1% | 38.0% |
| 4969707 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.59 | 43.0 | 2.93e-01 | 80.9% | 47.7% |
| 3239098 | 5.1.1.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › PF27563 | 0.58 | 34.0 | 2.65e-01 | 79.4% | 26.9% |
| 3840027 | 218.1.1.9 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF27310 | 0.57 | 31.0 | 3.14e-01 | 80.9% | 48.6% |
| 3832734 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 41.0 | 2.61e-01 | 80.9% | 44.1% |
| 4444947 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.56 | 43.0 | 3.95e-01 | 85.3% | 94.7% |
| 3498461 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.56 | 40.0 | 2.50e-01 | 75.0% | 97.8% |
| 4524184 | 304.111.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C | 0.54 | 40.0 | 3.15e-01 | 82.4% | 56.1% |
| 5015183 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.54 | 44.0 | 3.75e-01 | 89.7% | 85.5% |
| 4114467 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.54 | 37.0 | 2.77e-01 | 72.1% | 42.1% |
| 3508283 | 5.1.5.156 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_RSE1_1st | 0.54 | 36.0 | 2.27e-01 | 70.6% | 95.6% |
| 5004837 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 42.0 | 2.84e-01 | 86.8% | 94.2% |
| 4275209 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.54 | 37.0 | 2.75e-01 | 72.1% | 42.8% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.54 | 26.0 | 3.17e-01 | 83.8% | 68.9% |
| 3996824 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.54 | 36.0 | 2.34e-01 | 70.6% | 24.1% |
| 4947372 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 42.0 | 3.59e-01 | 85.3% | 69.1% |
| 3502898 | 5.1.3.140 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL, DUF5128 | 0.53 | 38.0 | 2.54e-01 | 76.5% | 93.3% |
| 3254382 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.53 | 40.0 | 3.51e-01 | 85.3% | 88.7% |
| 5012802 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 31.0 | 2.81e-01 | 77.9% | 40.0% |
| 3197429 | 244.2.1.10 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C | 0.53 | 36.0 | 2.44e-01 | 73.5% | 26.1% |
| 3935617 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 37.0 | 2.43e-01 | 76.5% | 47.1% |
| 3326303 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 36.0 | 2.41e-01 | 76.5% | 95.9% |
| 4965040 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.51 | 39.0 | 3.49e-01 | 91.2% | 97.3% |
| 3922711 | 5.1.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin | 0.50 | 35.0 | 2.57e-01 | 73.5% | 86.1% |
| 5028765 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.50 | 37.0 | 2.94e-01 | 92.6% | 36.7% |
D3
high
residues 325-376
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.76 | 47.0 | 4.38e-01 | 94.2% | 50.0% |
| 5hdiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 49.0 | 2.97e-01 | 88.5% | 78.3% |
| 1nubA01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 36.0 | 3.20e-01 | 82.7% | 39.0% |
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.55 | 46.0 | 2.72e-01 | 100.0% | 71.5% |
| 2proC01 | 3.30.300.50 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.54 | 32.0 | 3.05e-01 | 71.2% | 41.8% |
| 1p5hA01 | 3.40.50.10540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 | 0.51 | 41.0 | 2.63e-01 | 100.0% | 63.0% |
| 2kinA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.51 | 43.0 | 2.76e-01 | 92.3% | 30.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4115648 | 3671.1.1.1 ↗ | alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Tir_receptor_M | 0.72 | 45.0 | 3.83e-01 | 94.2% | 38.8% |
| 3975357 | 1083.1.1.3 ↗ | a+b duplicates or obligate multimers › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › Phage_fiber_2 | 0.69 | 50.0 | 5.58e-01 | 76.9% | 100.0% |
| 3414799 | 109.42.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › E3 ubiquitin-protein ligase SHPRH first helical domain › E3 ubiquitin-protein ligase SHPRH first helical domain › SHPRH_helical-1st | 0.61 | 45.0 | 3.16e-01 | 78.8% | 47.1% |
| 3799216 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.55 | 43.0 | 2.44e-01 | 98.1% | 14.1% |
| 4099242 | 109.2.1.28 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Lyase_catalyt | 0.55 | 41.0 | 2.48e-01 | 82.7% | 22.4% |
| 4094620 | 2003.1.5.23 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 | 0.54 | 42.0 | 2.84e-01 | 90.4% | 44.8% |
| 3799087 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.53 | 41.0 | 2.30e-01 | 90.4% | 80.3% |
| 2754401 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.51 | 42.0 | 2.41e-01 | 96.2% | 10.4% |
| 3488729 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.50 | 39.0 | 2.53e-01 | 90.4% | 20.0% |
| 4949317 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 38.0 | 3.09e-01 | 86.5% | 55.5% |
D4
high
residues 382-461