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SRR1747065_scaffold_0_prodigal-single.1__X__X__00404
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00404
Identity
- Kingdom:
- phage
Quality
53.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 143-205
D2
high
residues 621-733
Domain cluster:
rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5lwxA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.58 | 42.0 | 3.81e-01 | 73.5% | 69.1% |
| 1a65A01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 44.0 | 4.20e-01 | 81.4% | 80.3% |
| 3dcyA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.55 | 48.0 | 3.79e-01 | 98.2% | 78.5% |
| 3v9eA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 37.0 | 3.17e-01 | 72.6% | 67.3% |
| 5u8rA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 31.0 | 3.16e-01 | 82.3% | 58.3% |
D3
medium
residues 14-107
D4
medium
residues 343-405
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.68 | 50.0 | 5.30e-01 | 79.4% | 89.1% |
| 4dunA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.67 | 52.0 | 4.19e-01 | 85.7% | 76.4% |
| 4bndA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.63 | 46.0 | 3.53e-01 | 79.4% | 57.7% |
| 3td9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 54.0 | 4.11e-01 | 96.8% | 66.9% |
| 4maaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 53.0 | 3.94e-01 | 100.0% | 65.9% |
| 3lbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 52.0 | 3.65e-01 | 96.8% | 80.7% |
| 2i5bA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 52.0 | 3.48e-01 | 100.0% | 69.9% |
| 3uboB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 53.0 | 3.36e-01 | 98.4% | 79.8% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.61 | 43.0 | 4.60e-01 | 95.2% | 94.1% |
| 1pj5A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.60 | 41.0 | 3.03e-01 | 71.4% | 64.6% |
| 3rp6A02 | 3.30.9.30 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.59 | 42.0 | 2.94e-01 | 77.8% | 65.6% |
| 4o2tA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 39.0 | 2.97e-01 | 76.2% | 74.4% |
| 5ov3B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 43.0 | 2.82e-01 | 88.9% | 43.6% |
| 1zbtA02 | 3.30.70.1660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.30e-01 | 93.7% | 79.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1505155 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.73 | 50.0 | 5.27e-01 | 71.4% | 89.3% |
| 3921177 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.71 | 51.0 | 5.36e-01 | 74.6% | 85.5% |
| 3989853 | 77.1.1.13 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR | 0.70 | 62.0 | 3.89e-01 | 96.8% | 42.9% |
| 3989854 | 3761.1.1.4 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR | 0.70 | 61.0 | 5.53e-01 | 96.8% | 97.6% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.69 | 46.0 | 5.28e-01 | 71.4% | 97.8% |
| 3967702 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.65 | 49.0 | 4.03e-01 | 84.1% | 80.8% |
| 3623217 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.65 | 46.0 | 5.02e-01 | 87.3% | 94.0% |
| 3801927 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.64 | 55.0 | 3.92e-01 | 98.4% | 70.0% |
| 3291383 | 286.1.1.0 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like | 0.63 | 48.0 | 3.93e-01 | 85.7% | 81.6% |
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.63 | 47.0 | 5.11e-01 | 90.5% | 100.0% |
| 4449615 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.62 | 34.0 | 3.08e-01 | 71.4% | 35.6% |
| 4928422 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.62 | 53.0 | 3.44e-01 | 100.0% | 80.5% |
| 4004053 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.61 | 45.0 | 3.92e-01 | 77.8% | 72.6% |
| 1107990 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.61 | 43.0 | 4.63e-01 | 95.2% | 96.0% |
| 3810368 | 2006.1.1.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP | 0.60 | 45.0 | 3.23e-01 | 81.0% | 48.2% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.60 | 51.0 | 3.65e-01 | 96.8% | 35.3% |
| 3799250 | 5.1.5.105 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st | 0.58 | 46.0 | 2.80e-01 | 85.7% | 39.0% |
| 4067863 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.56 | 48.0 | 3.55e-01 | 96.8% | 57.6% |
| 4423027 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.56 | 47.0 | 3.43e-01 | 96.8% | 49.2% |
| 5018558 | 2008.1.1.162 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30170 | 0.55 | 46.0 | 3.70e-01 | 96.8% | 79.3% |
| 4947743 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.54 | 45.0 | 3.40e-01 | 96.8% | 53.5% |
| 4001793 | 2.1.1.71 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TTC5_OB | 0.54 | 38.0 | 2.77e-01 | 74.6% | 72.1% |
| 4088743 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 46.0 | 4.74e-01 | 98.4% | 100.0% |
| 4971206 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.53 | 46.0 | 2.91e-01 | 100.0% | 55.0% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.53 | 41.0 | 2.48e-01 | 85.7% | 16.7% |
| 5046549 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.53 | 41.0 | 3.78e-01 | 98.4% | 66.3% |
| 5072461 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.52 | 42.0 | 2.76e-01 | 100.0% | 87.1% |
| 3232262 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.52 | 40.0 | 3.50e-01 | 90.5% | 75.5% |
| 3838580 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.52 | 39.0 | 2.90e-01 | 84.1% | 63.9% |
| 4954529 | 3335.1.1.0 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B | 0.51 | 35.0 | 3.58e-01 | 71.4% | 93.3% |
| 3272442 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 40.0 | 2.55e-01 | 85.7% | 42.2% |
| 3890729 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 40.0 | 2.47e-01 | 87.3% | 42.4% |
| 3912023 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.50 | 42.0 | 2.69e-01 | 92.1% | 43.2% |
| 4132814 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.50 | 41.0 | 2.88e-01 | 100.0% | 73.8% |