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SRR1747065_scaffold_0_prodigal-single.1__X__X__00405
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00405
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 187-235
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5gp9A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.78 | 53.0 | 5.36e-01 | 77.6% | 72.9% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.76 | 66.0 | 4.68e-01 | 100.0% | 84.6% |
| 1rktA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 54.0 | 5.33e-01 | 79.6% | 71.7% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.71 | 58.0 | 3.64e-01 | 93.9% | 86.2% |
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.70 | 55.0 | 5.16e-01 | 85.7% | 74.6% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.69 | 55.0 | 4.15e-01 | 100.0% | 35.2% |
| 5u4nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 56.0 | 3.40e-01 | 93.9% | 82.9% |
| 3unbF00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.67 | 59.0 | 3.76e-01 | 100.0% | 20.5% |
| 5ubvA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 56.0 | 5.02e-01 | 100.0% | 90.1% |
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 48.0 | 3.86e-01 | 79.6% | 39.6% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.65 | 50.0 | 4.99e-01 | 98.0% | 84.6% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 45.0 | 4.68e-01 | 77.6% | 92.7% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 51.0 | 3.49e-01 | 87.8% | 87.4% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 45.0 | 4.31e-01 | 75.5% | 66.7% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.63 | 51.0 | 4.55e-01 | 100.0% | 68.4% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 47.0 | 3.62e-01 | 83.7% | 55.0% |
| 2dznF00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 52.0 | 4.74e-01 | 100.0% | 92.8% |
| 2kruA01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.62 | 51.0 | 5.10e-01 | 100.0% | 96.2% |
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.61 | 43.0 | 4.09e-01 | 71.4% | 60.3% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 4.41e-01 | 83.7% | 75.9% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 46.0 | 4.10e-01 | 100.0% | 74.4% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 47.0 | 3.32e-01 | 95.9% | 47.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3680188 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.83 | 65.0 | 4.11e-01 | 81.6% | 19.5% |
| 3819498 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.70 | 59.0 | 5.46e-01 | 100.0% | 90.8% |
| 3370201 | 101.1.8.17 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › PF26576 | 0.70 | 48.0 | 3.77e-01 | 75.5% | 60.9% |
| 3596625 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 59.0 | 5.35e-01 | 100.0% | 90.0% |
| 4231508 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 58.0 | 5.32e-01 | 100.0% | 72.3% |
| 4982926 | 1118.1.1.1 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 | 0.69 | 47.0 | 3.15e-01 | 73.5% | 17.6% |
| 3399255 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.68 | 55.0 | 4.23e-01 | 100.0% | 39.1% |
| 4144086 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.67 | 57.0 | 4.59e-01 | 100.0% | 58.0% |
| 3397006 | 541.1.1.4 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Radial_spoke | 0.66 | 45.0 | 4.43e-01 | 75.5% | 81.8% |
| 3532518 | 148.1.3.206 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31015 | 0.65 | 56.0 | 4.69e-01 | 100.0% | 90.9% |
| 3934455 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.65 | 54.0 | 4.18e-01 | 95.9% | 65.2% |
| 3320952 | 2006.1.4.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 | 0.63 | 53.0 | 3.95e-01 | 100.0% | 65.2% |
| 3191712 | 3619.1.1.1 ↗ | alpha arrays › Nucleoporin NUP120 helical domain › Nucleoporin NUP120 helical domain › Nucleoporin NUP120 helical domain › NUP120_helical | 0.55 | 43.0 | 2.75e-01 | 95.9% | 15.0% |
| 157374 | 107.1.1.0 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c | 0.50 | 36.0 | 3.22e-01 | 100.0% | 50.6% |
D2
medium
residues 8-115
Domain cluster:
rep: IMGVR_UViG_2681813395_000001-2681813395-2684032312__D103-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01966.29 best | HD | 34.8 | 2.50e-08 | 81.5% | 75.9% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s4lA00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.76 | 66.0 | 5.32e-01 | 92.6% | 62.9% |
| 2pq7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.76 | 66.0 | 5.54e-01 | 91.7% | 71.7% |
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 39.0 | 3.27e-01 | 78.7% | 41.9% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.55 | 33.0 | 3.89e-01 | 90.7% | 88.9% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 33.0 | 2.69e-01 | 95.4% | 31.7% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.54 | 32.0 | 3.88e-01 | 75.9% | 95.4% |
| 7ckaA01 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.54 | 42.0 | 3.47e-01 | 84.3% | 77.7% |
| 1blwC00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 37.0 | 3.41e-01 | 73.1% | 86.5% |
| 5k29A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 40.0 | 4.18e-01 | 87.0% | 92.8% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 37.0 | 3.83e-01 | 90.7% | 82.0% |
| 2k3oA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.50 | 37.0 | 3.58e-01 | 86.1% | 66.7% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.50 | 36.0 | 3.98e-01 | 92.6% | 98.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3985471 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.91 | 81.0 | 6.65e-01 | 93.5% | 64.4% |
| 4511032 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.90 | 81.0 | 5.66e-01 | 94.4% | 36.3% |
| 4156349 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.89 | 81.0 | 5.49e-01 | 94.4% | 41.5% |
| 3950512 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.87 | 79.0 | 5.44e-01 | 94.4% | 34.9% |
| 5052181 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.83 | 68.0 | 5.33e-01 | 93.5% | 44.9% |
| 3959695 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.82 | 66.0 | 5.83e-01 | 84.3% | 61.4% |
| 1143835 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.81 | 74.0 | 5.29e-01 | 94.4% | 45.7% |
| 4444031 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.80 | 72.0 | 4.89e-01 | 94.4% | 35.1% |
| 3971666 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.80 | 72.0 | 5.15e-01 | 94.4% | 44.0% |
| 4614914 | 131.2.1.5 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD, PF27444 | 0.78 | 70.0 | 4.95e-01 | 94.4% | 41.0% |
| 4253012 | 131.2.1.5 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD, PF27444 | 0.78 | 70.0 | 5.07e-01 | 94.4% | 44.8% |
| 5004208 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.76 | 67.0 | 5.23e-01 | 92.6% | 79.5% |
| 4062451 | 131.2.1.5 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD, PF27444 | 0.75 | 70.0 | 4.76e-01 | 98.1% | 39.1% |
| 5044683 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.75 | 66.0 | 5.34e-01 | 92.6% | 78.4% |
| 5036631 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.75 | 52.0 | 5.36e-01 | 72.2% | 75.2% |
| 4977938 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.74 | 62.0 | 5.31e-01 | 88.0% | 81.2% |
| 3290187 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.73 | 63.0 | 4.84e-01 | 90.7% | 45.1% |
| 5002186 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.73 | 68.0 | 4.97e-01 | 99.1% | 68.1% |
| 5077860 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.73 | 65.0 | 5.21e-01 | 94.4% | 76.9% |
| 3690435 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.72 | 63.0 | 4.74e-01 | 90.7% | 45.4% |
| 4034309 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.62 | 53.0 | 3.95e-01 | 94.4% | 51.6% |
| 3928667 | 3277.2.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C | 0.61 | 42.0 | 4.41e-01 | 70.4% | 84.2% |
| 5058385 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.58 | 47.0 | 4.03e-01 | 90.7% | 74.1% |
| 3876932 | 592.3.1.8 ↗ | alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › PF31020 | 0.57 | 45.0 | 4.63e-01 | 87.0% | 89.5% |
| 3701680 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.56 | 41.0 | 4.29e-01 | 77.8% | 92.9% |
| 4396592 | 7064.1.1.3 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › FUSC_2 | 0.56 | 46.0 | 4.23e-01 | 93.5% | 94.7% |
| 3611276 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.54 | 42.0 | 4.37e-01 | 85.2% | 96.0% |
| 4630575 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.54 | 30.0 | 2.89e-01 | 83.3% | 47.2% |
| 4665476 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.53 | 40.0 | 3.25e-01 | 80.6% | 57.7% |
| 3935848 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.53 | 41.0 | 3.21e-01 | 82.4% | 78.1% |
| 4953048 | 3754.1.1.0 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related | 0.53 | 43.0 | 3.20e-01 | 89.8% | 68.8% |
| 3883917 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.52 | 44.0 | 3.66e-01 | 96.3% | 92.5% |
| 3261517 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.51 | 39.0 | 3.51e-01 | 82.4% | 86.5% |
| 3712132 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.51 | 42.0 | 3.61e-01 | 96.3% | 92.8% |
| 3691696 | 3924.1.1.0 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 | 0.50 | 43.0 | 3.17e-01 | 95.4% | 47.7% |
| 3743438 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.50 | 41.0 | 3.45e-01 | 91.7% | 91.8% |
D3
medium
residues 116-180
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6nifA01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.68 | 32.0 | 2.26e-01 | 83.1% | 13.7% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.68 | 31.0 | 3.38e-01 | 78.5% | 49.1% |
| 4ar9A01 | 3.40.30.160 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Collagenase ColT, N-terminal domain | 0.63 | 35.0 | 2.75e-01 | 76.9% | 24.6% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 55.0 | 3.78e-01 | 100.0% | 32.4% |
| 2qjyB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.61 | 42.0 | 2.92e-01 | 72.3% | 24.0% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 49.0 | 4.20e-01 | 92.3% | 100.0% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.60 | 47.0 | 3.19e-01 | 86.2% | 91.7% |
| 2felA00 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.59 | 52.0 | 3.31e-01 | 100.0% | 96.7% |
| 3u2rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 3.56e-01 | 81.5% | 95.6% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 4.12e-01 | 89.2% | 86.2% |
| 3dgpA00 | 3.30.70.2610 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 30.0 | 3.07e-01 | 75.4% | 48.4% |
| 2cpqA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 35.0 | 3.54e-01 | 86.2% | 59.4% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.56 | 34.0 | 3.35e-01 | 76.9% | 55.1% |
| 1jmuB02 | 1.10.2040.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 2 › Protein mu-1, chain B, domain 2 | 0.55 | 47.0 | 3.78e-01 | 93.8% | 91.9% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.55 | 30.0 | 3.20e-01 | 87.7% | 56.4% |
| 2dy1A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.55 | 33.0 | 3.16e-01 | 83.1% | 50.0% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 3.78e-01 | 87.7% | 89.8% |
| 2iqcA00 | 1.25.40.490 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 3.26e-01 | 93.8% | 37.0% |
| 2wyoC01 | 3.30.1490.250 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 41.0 | 3.48e-01 | 83.1% | 54.8% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 46.0 | 4.04e-01 | 100.0% | 99.0% |
| 2ctfA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 39.0 | 3.40e-01 | 81.5% | 54.9% |
| 6aqgD02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 42.0 | 2.80e-01 | 100.0% | 57.6% |
| 2kt2A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 30.0 | 3.00e-01 | 83.1% | 50.7% |
| 1hc7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 42.0 | 2.93e-01 | 98.5% | 51.7% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 32.0 | 2.97e-01 | 89.2% | 49.4% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.51 | 39.0 | 3.44e-01 | 83.1% | 88.4% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 30.0 | 2.95e-01 | 83.1% | 48.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3893901 | 3826.1.1.56 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › TRIP4_3rd | 0.66 | 49.0 | 4.81e-01 | 80.0% | 84.3% |
| 5013274 | 5011.1.1.0 ↗ | extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa | 0.66 | 51.0 | 4.68e-01 | 84.6% | 91.8% |
| 3279061 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.66 | 34.0 | 3.35e-01 | 81.5% | 44.3% |
| 4676848 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.64 | 37.0 | 3.53e-01 | 81.5% | 48.0% |
| 5073703 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.64 | 33.0 | 3.63e-01 | 86.2% | 58.0% |
| 3414803 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 57.0 | 3.56e-01 | 100.0% | 34.2% |
| 3410018 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.63 | 56.0 | 3.48e-01 | 100.0% | 35.7% |
| 3283363 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.62 | 41.0 | 3.17e-01 | 98.5% | 31.7% |
| 4981980 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.62 | 53.0 | 4.38e-01 | 93.8% | 60.0% |
| 4012268 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.61 | 46.0 | 3.25e-01 | 83.1% | 25.6% |
| 3976571 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 36.0 | 3.43e-01 | 81.5% | 47.5% |
| 3408042 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 53.0 | 3.34e-01 | 100.0% | 35.2% |
| 3630540 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.60 | 51.0 | 3.47e-01 | 98.5% | 56.2% |
| 5040756 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.60 | 42.0 | 3.76e-01 | 86.2% | 51.6% |
| 4944025 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.59 | 33.0 | 3.25e-01 | 83.1% | 47.1% |
| 3735848 | 109.4.1.1553 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28151 | 0.59 | 46.0 | 2.60e-01 | 89.2% | 21.4% |
| 4012791 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 34.0 | 3.26e-01 | 81.5% | 45.0% |
| 3781291 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 50.0 | 4.35e-01 | 95.4% | 72.0% |
| 5058517 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.58 | 44.0 | 3.75e-01 | 86.2% | 60.8% |
| 3473429 | 327.11.2.14 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_9 | 0.58 | 44.0 | 3.94e-01 | 81.5% | 74.4% |
| 4285070 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.57 | 33.0 | 3.12e-01 | 75.4% | 45.0% |
| 4138755 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.57 | 36.0 | 2.94e-01 | 98.5% | 31.1% |
| 3738385 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.57 | 33.0 | 3.09e-01 | 83.1% | 44.7% |
| 4636695 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.56 | 34.0 | 3.44e-01 | 89.2% | 58.8% |
| 3387263 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.56 | 49.0 | 3.20e-01 | 100.0% | 67.7% |
| 3832390 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 47.0 | 3.87e-01 | 98.5% | 88.0% |
| 3698932 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.55 | 39.0 | 3.88e-01 | 98.5% | 70.0% |
| 3717340 | 605.1.1.155 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 | 0.55 | 40.0 | 2.83e-01 | 93.8% | 25.0% |
| 3515089 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.55 | 30.0 | 3.02e-01 | 76.9% | 48.5% |
| 3232477 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.55 | 42.0 | 3.68e-01 | 84.6% | 89.0% |
| 3624104 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 37.0 | 3.60e-01 | 78.5% | 63.0% |
| 3734074 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 36.0 | 3.51e-01 | 92.3% | 62.9% |
| 4062521 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.54 | 47.0 | 3.71e-01 | 96.9% | 71.1% |
| 3969863 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 29.0 | 2.86e-01 | 87.7% | 44.1% |
| 3830976 | 327.11.2.33 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_2nd | 0.53 | 38.0 | 3.66e-01 | 76.9% | 73.3% |
| 3944068 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.53 | 36.0 | 2.97e-01 | 72.3% | 66.4% |
| 4994431 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.53 | 33.0 | 3.38e-01 | 93.8% | 64.6% |
| 3230011 | 6106.1.1.0 ↗ | extended segments › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY | 0.53 | 33.0 | 3.11e-01 | 75.4% | 48.2% |
| 3177315 | 304.8.1.93 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF29153 | 0.52 | 39.0 | 3.53e-01 | 100.0% | 60.0% |
| 3274487 | 605.1.1.155 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 | 0.52 | 46.0 | 3.39e-01 | 100.0% | 87.4% |
| 3286207 | 304.37.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 | 0.52 | 33.0 | 3.16e-01 | 92.3% | 56.0% |
| 3703451 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.52 | 39.0 | 3.48e-01 | 80.0% | 91.1% |
| 4144329 | 213.1.1.11 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT | 0.51 | 43.0 | 3.10e-01 | 100.0% | 71.6% |