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SRR1747065_scaffold_0_prodigal-single.1__X__X__00407
Bact-VirSRR1747065_scaffold_0_prodigal-single.1__X__X__00407
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 138-333
Domain cluster:
rep: MH494197.1__AXC39221.1__X__00509__D22-210
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03796.22 best | DnaB_C | 87.5 | 1.40e-24 | 96.9% | 70.6% |
| PF13481.13 | AAA_25 | 27.2 | 3.80e-06 | 91.8% | 66.1% |
| PF06745.20 | ATPase | 28.4 | 1.50e-06 | 75.5% | 34.6% |
D2
medium
residues 6-115
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.66 | 33.0 | 3.90e-01 | 85.5% | 67.9% |
| 3t9oB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.56 | 34.0 | 3.30e-01 | 99.1% | 54.2% |
| 3nf2A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 45.0 | 3.23e-01 | 97.3% | 76.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3056106 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.79 | 74.0 | 6.62e-01 | 100.0% | 83.8% |
| 3947982 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.74 | 67.0 | 6.04e-01 | 100.0% | 77.3% |
| 4132802 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.72 | 65.0 | 5.90e-01 | 100.0% | 77.3% |
| 4376809 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.58 | 50.0 | 4.67e-01 | 96.4% | 77.9% |
| 4657866 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.54 | 37.0 | 4.26e-01 | 96.4% | 95.0% |