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SRR1747065_scaffold_10_prodigal-single.1__X__X__00072

Bact-Vir

SRR1747065_scaffold_10_prodigal-single.1__X__X__00072

Identity

Kingdom:
phage

Quality

67.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 88-160
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03118.22 best RNA_pol_A_CTD 49.8 3.20e-13 79.5% 82.1%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y88A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.82 61.0 6.69e-01 79.5% 96.6%
1doqA00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.80 67.0 6.87e-01 91.8% 97.1%
2zj8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.79 56.0 6.17e-01 80.8% 94.7%
3osnA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.78 59.0 5.84e-01 86.3% 76.6%
3c1yA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.75 54.0 5.76e-01 76.7% 96.8%
5tt5A05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.72 52.0 5.19e-01 78.1% 79.2%
2q0zX02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.71 51.0 5.57e-01 79.5% 94.8%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.71 56.0 5.29e-01 86.3% 81.8%
3kkaD00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.70 56.0 5.75e-01 86.3% 97.1%
2va8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.69 48.0 5.25e-01 76.7% 96.4%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 59.0 4.76e-01 100.0% 81.0%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 57.0 4.65e-01 100.0% 80.7%
2r0yA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 48.0 3.92e-01 83.6% 86.2%
3e53A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.60 42.0 2.61e-01 72.6% 37.2%
2q7fA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 41.0 3.10e-01 72.6% 31.4%
1fuuB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 3.27e-01 95.9% 44.7%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 47.0 3.62e-01 100.0% 81.3%
4wuvA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 3.01e-01 94.5% 63.6%
1vecA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.23e-01 97.3% 47.6%
1j3eA00 1.20.1380.10 Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain 0.50 42.0 3.75e-01 100.0% 70.4%
ECOD (96)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4559902 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.97 77.0 7.94e-01 82.2% 85.7%
4165308 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.96 76.0 8.37e-01 82.2% 100.0%
4201496 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.95 77.0 7.64e-01 83.6% 82.7%
4340260 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.95 73.0 7.84e-01 79.5% 93.7%
4546157 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.95 76.0 7.60e-01 83.6% 82.7%
4474556 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.95 75.0 8.23e-01 82.2% 100.0%
4155947 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.94 74.0 8.22e-01 82.2% 100.0%
4497953 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.91 74.0 7.21e-01 90.4% 78.8%
4228076 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.91 77.0 8.15e-01 90.4% 100.0%
1292856 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.91 77.0 7.41e-01 90.4% 81.2%
4255937 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.90 80.0 7.37e-01 93.2% 77.8%
4506619 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.90 76.0 6.61e-01 90.4% 61.9%
4350221 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.90 75.0 7.26e-01 89.0% 80.0%
4285151 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.90 69.0 7.31e-01 80.8% 90.8%
4082618 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.89 75.0 7.48e-01 90.4% 86.7%
4538575 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.89 74.0 6.74e-01 90.4% 68.4%
3554607 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.88 72.0 6.97e-01 86.3% 82.5%
3410797 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.86 64.0 7.03e-01 78.1% 100.0%
3869571 102.1.1.179 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_XRCC3_RpoA 0.86 65.0 6.62e-01 79.5% 84.3%
3283042 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.85 64.0 7.03e-01 84.9% 96.7%
3057038 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.84 65.0 7.05e-01 80.8% 96.7%
3443197 102.1.1.179 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_XRCC3_RpoA 0.84 65.0 7.10e-01 83.6% 100.0%
5052765 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.83 66.0 6.72e-01 83.6% 90.0%
4669271 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.83 68.0 6.93e-01 84.9% 95.7%
3487665 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 64.0 7.02e-01 82.2% 100.0%
4168206 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 64.0 6.23e-01 82.2% 87.5%
4968089 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.82 62.0 6.74e-01 87.7% 96.7%
2951 102.1.1.52 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › AF1548-like_C 0.82 61.0 6.69e-01 79.5% 96.6%
3189901 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.82 66.0 6.77e-01 86.3% 95.7%
5061085 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 56.0 6.09e-01 72.6% 90.0%
5041504 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.80 63.0 6.44e-01 95.9% 88.6%
5056035 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.80 56.0 6.11e-01 79.5% 90.0%
4403062 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.80 63.0 6.41e-01 84.9% 87.1%
3286960 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 72.0 4.30e-01 100.0% 48.6%
3319098 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.79 62.0 6.19e-01 83.6% 97.3%
4272019 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.79 64.0 6.76e-01 95.9% 98.5%
3960638 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.79 60.0 6.32e-01 86.3% 90.8%
4152195 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.78 65.0 6.52e-01 95.9% 88.0%
3987397 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.78 60.0 6.15e-01 84.9% 84.3%
4345341 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.78 62.0 6.00e-01 86.3% 77.5%
4240528 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.78 59.0 6.21e-01 86.3% 90.8%
3962227 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.77 58.0 5.95e-01 84.9% 82.9%
4948001 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.77 62.0 6.54e-01 94.5% 98.5%
364538 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.77 55.0 5.79e-01 78.1% 83.3%
4032279 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.77 57.0 6.20e-01 86.3% 95.0%
4999572 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.77 58.0 6.24e-01 79.5% 96.7%
4944206 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.77 55.0 5.92e-01 75.3% 95.0%
5081275 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.77 58.0 6.15e-01 80.8% 92.3%
3567951 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.77 60.0 5.81e-01 83.6% 83.7%
4945133 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 58.0 6.12e-01 82.2% 100.0%
5076923 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.76 62.0 6.34e-01 95.9% 92.9%
5039718 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.76 54.0 6.03e-01 79.5% 98.2%
3882238 102.1.1.16 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.76 60.0 6.16e-01 86.3% 91.4%
4442475 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 62.0 6.52e-01 93.2% 98.5%
5053399 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 60.0 5.70e-01 84.9% 82.4%
4952232 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.75 55.0 5.78e-01 79.5% 87.7%
4977890 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.75 54.0 5.69e-01 80.8% 86.2%
5022597 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.75 58.0 6.13e-01 83.6% 92.3%
5060034 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.75 55.0 5.58e-01 79.5% 91.8%
4210142 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.74 54.0 5.83e-01 83.6% 93.3%
5039719 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.74 52.0 5.61e-01 72.6% 93.3%
5031290 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.74 61.0 6.20e-01 95.9% 94.3%
4995116 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.74 53.0 5.83e-01 79.5% 100.0%
4470895 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.74 53.0 5.79e-01 80.8% 100.0%
4420914 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 56.0 6.10e-01 91.8% 98.3%
3389838 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 54.0 5.42e-01 78.1% 88.0%
5050871 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.74 56.0 5.92e-01 82.2% 98.4%
5035437 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 51.0 5.91e-01 79.5% 98.1%
4597170 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.74 59.0 6.03e-01 87.7% 91.4%
4964212 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.73 55.0 5.61e-01 80.8% 87.1%
3570848 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.73 57.0 5.74e-01 84.9% 85.3%
3862132 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.73 57.0 5.74e-01 84.9% 84.0%
4932604 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.73 57.0 5.56e-01 84.9% 78.8%
3919158 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 54.0 5.92e-01 80.8% 96.7%
4363302 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.72 54.0 5.87e-01 90.4% 96.7%
4015442 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.72 54.0 5.41e-01 80.8% 96.0%
4234483 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.72 53.0 5.67e-01 79.5% 98.3%
4927478 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.71 54.0 5.57e-01 83.6% 95.7%
5061691 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.71 53.0 5.69e-01 82.2% 95.0%
4204484 102.1.1.81 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.70 52.0 3.96e-01 79.5% 37.1%
4199114 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.70 53.0 5.66e-01 80.8% 100.0%
3865559 592.1.1.0 alpha arrays › PWI domain-like › PWI domain › PWI domain 0.70 51.0 5.51e-01 78.1% 96.7%
4946797 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.70 53.0 5.59e-01 83.6% 95.4%
3551495 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 51.0 5.50e-01 78.1% 96.7%
4975251 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.70 51.0 5.48e-01 79.5% 100.0%
5038804 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.70 50.0 5.36e-01 80.8% 91.7%
365854 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.70 50.0 5.38e-01 79.5% 90.2%
3518655 102.1.1.78 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › EPH_SAM 0.69 55.0 5.37e-01 86.3% 78.8%
3617542 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.69 51.0 5.55e-01 79.5% 95.0%
5053331 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.69 53.0 5.11e-01 84.9% 72.9%
4940020 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.68 51.0 4.81e-01 82.2% 69.7%
4097900 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.67 49.0 3.76e-01 80.8% 80.0%
3949223 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.67 49.0 3.86e-01 80.8% 37.0%
4455972 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.66 49.0 3.89e-01 80.8% 51.2%
3696830 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.53 47.0 3.16e-01 97.3% 81.1%
3415391 2004.1.1.364 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.51 43.0 2.59e-01 97.3% 24.5%
D2 medium residues 1-81
PDB