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SRR1747065_scaffold_10_prodigal-single.1__X__X__00074

Bact-Vir

SRR1747065_scaffold_10_prodigal-single.1__X__X__00074

Identity

Kingdom:
phage

Quality

84.3 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-80
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 54.0 5.58e-01 100.0% 78.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 5.33e-01 98.7% 96.2%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 54.0 5.80e-01 98.7% 92.5%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 5.06e-01 100.0% 82.3%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 51.0 5.18e-01 100.0% 81.6%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.66 57.0 5.40e-01 98.7% 81.1%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 28.0 3.22e-01 87.2% 55.4%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.60 49.0 3.97e-01 93.6% 71.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 37.0 4.09e-01 87.2% 85.2%
2m1hA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 48.0 4.31e-01 100.0% 81.8%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 41.0 3.48e-01 100.0% 49.6%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.73e-01 73.1% 96.1%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.52 42.0 3.73e-01 92.3% 65.8%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.51 40.0 2.78e-01 88.5% 72.6%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.72e-01 89.7% 70.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3797477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 6.19e-01 97.4% 93.8%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.75 50.0 5.40e-01 100.0% 81.5%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 59.0 6.02e-01 100.0% 89.3%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.26e-01 100.0% 83.1%
3473924 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 55.0 5.93e-01 100.0% 96.9%
3519380 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 58.0 5.79e-01 100.0% 83.7%
3677829 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.72 47.0 4.21e-01 100.0% 48.2%
3370389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.36e-01 100.0% 90.8%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.93e-01 100.0% 90.0%
3766287 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.76e-01 100.0% 66.0%
3842361 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.65 56.0 5.28e-01 100.0% 78.9%
3494860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.92e-01 100.0% 87.8%
3572647 4.1.1.227 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.61 44.0 4.24e-01 100.0% 65.6%
3908665 4.1.1.227 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.61 46.0 4.33e-01 98.7% 66.3%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.60 51.0 4.96e-01 100.0% 85.9%
4994410 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 4.80e-01 92.3% 92.9%
4953898 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 43.0 3.65e-01 84.6% 50.4%
3475361 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 45.0 3.92e-01 92.3% 80.8%
5026090 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 42.0 4.34e-01 92.3% 89.3%
4069753 295.1.1.2 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.55 45.0 3.87e-01 94.9% 83.0%
4965032 375.1.1.343 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.55 37.0 4.23e-01 85.9% 100.0%
4176421 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 46.0 3.94e-01 100.0% 61.5%
4032084 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 44.0 4.16e-01 93.6% 77.9%
4999914 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 46.0 3.94e-01 100.0% 64.6%
3229378 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 46.0 4.05e-01 100.0% 80.0%
3387114 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 40.0 3.82e-01 84.6% 69.5%
3375457 4.1.1.159 ↗ beta barrels › SH3 › SH3 › SH3 › Saf4_Yju2 0.52 41.0 4.16e-01 88.5% 89.3%
5008002 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.50 35.0 3.35e-01 74.4% 91.6%