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SRR1747065_scaffold_10_prodigal-single.1__X__X__00142

Bact-Vir

SRR1747065_scaffold_10_prodigal-single.1__X__X__00142

Identity

Kingdom:
phage

Quality

44.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-106
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 41.0 3.81e-01 76.5% 85.8%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 40.0 3.70e-01 76.5% 86.8%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 47.0 3.80e-01 96.1% 90.8%
1uoyA01 2.30.130.50 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.54 30.0 3.65e-01 83.3% 94.7%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 30.0 3.15e-01 80.4% 60.6%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 32.0 3.69e-01 83.3% 92.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4539369 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.66 34.0 4.33e-01 86.3% 89.1%
4030100 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 28.0 3.49e-01 85.3% 65.0%
4641081 391.1.2.18 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › TILa 0.64 32.0 4.13e-01 84.3% 87.3%
3532309 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.63 32.0 3.97e-01 83.3% 80.0%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.62 31.0 3.97e-01 71.6% 85.5%
3185909 394.1.1.2 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_19 0.61 30.0 3.97e-01 76.5% 92.0%
3738728 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.56 33.0 3.41e-01 73.5% 60.0%
3401139 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.56 44.0 3.53e-01 84.3% 91.7%
4999472 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.56 40.0 3.25e-01 88.2% 40.0%
3967702 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.54 39.0 3.69e-01 76.5% 89.6%
4120630 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.53 39.0 3.71e-01 76.5% 94.2%
3733480 2006.1.1.27 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › ISN1 0.52 47.0 3.17e-01 100.0% 60.5%
4578847 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.51 36.0 2.48e-01 72.5% 23.7%
3937472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 42.0 4.24e-01 93.1% 91.4%
D2 high residues 125-168
PDB
D3 medium residues 185-304
PDB
D4 medium residues 333-397
PDB