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SRR1747065_scaffold_10_prodigal-single.1__X__X__00144
Bact-VirSRR1747065_scaffold_10_prodigal-single.1__X__X__00144
Identity
- Kingdom:
- phage
Quality
97.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-81
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.85 | 69.0 | 6.75e-01 | 87.2% | 87.1% |
| 4bolA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.83 | 65.0 | 6.51e-01 | 88.5% | 81.2% |
| 3bkhA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.81 | 71.0 | 6.87e-01 | 93.6% | 89.5% |
| 4g54A02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.78 | 67.0 | 6.92e-01 | 91.0% | 100.0% |
| 1eakA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.77 | 55.0 | 5.99e-01 | 85.9% | 92.1% |
| 7aj9A01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.77 | 56.0 | 5.99e-01 | 76.9% | 94.0% |
| 1lbuA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.75 | 66.0 | 6.44e-01 | 94.9% | 97.6% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.62 | 44.0 | 4.20e-01 | 75.6% | 91.6% |
| 2nr7A00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.61 | 45.0 | 3.39e-01 | 79.5% | 32.5% |
| 1wp9B03 | 1.20.1320.20 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain | 0.57 | 40.0 | 3.39e-01 | 71.8% | 76.2% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 33.0 | 3.32e-01 | 100.0% | 56.1% |
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 42.0 | 3.93e-01 | 100.0% | 68.0% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.54 | 38.0 | 3.73e-01 | 75.6% | 96.6% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.53 | 37.0 | 3.61e-01 | 74.4% | 95.4% |
| 7x4eA01 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.51 | 44.0 | 4.02e-01 | 100.0% | 94.4% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.50 | 34.0 | 3.31e-01 | 78.2% | 62.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4117418 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.93 | 67.0 | 7.59e-01 | 74.4% | 98.3% |
| 3957237 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.88 | 65.0 | 6.65e-01 | 76.9% | 94.7% |
| 3959835 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.87 | 65.0 | 6.88e-01 | 78.2% | 100.0% |
| 3955223 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.87 | 67.0 | 6.67e-01 | 80.8% | 92.5% |
| 1934000 | 144.1.1.2 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1,PG_binding_5 | 0.86 | 73.0 | 5.65e-01 | 89.7% | 53.8% |
| 1165079 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.85 | 71.0 | 6.53e-01 | 87.2% | 79.2% |
| 4055540 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.84 | 66.0 | 7.04e-01 | 85.9% | 94.2% |
| 4312892 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 61.0 | 6.84e-01 | 78.2% | 98.3% |
| 2859574 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.83 | 65.0 | 6.82e-01 | 82.1% | 91.5% |
| 4473649 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 66.0 | 6.37e-01 | 83.3% | 92.9% |
| 5019285 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 69.0 | 6.47e-01 | 89.7% | 95.8% |
| 1086899 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 66.0 | 6.65e-01 | 89.7% | 84.6% |
| 3274761 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 75.0 | 5.81e-01 | 100.0% | 65.5% |
| 4010440 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 70.0 | 7.19e-01 | 92.3% | 100.0% |
| 3299326 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 60.0 | 6.48e-01 | 76.9% | 96.9% |
| 4032027 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 69.0 | 6.73e-01 | 91.0% | 89.4% |
| 4173379 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 67.0 | 6.68e-01 | 88.5% | 95.0% |
| 1877329 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 61.0 | 6.23e-01 | 79.5% | 82.9% |
| 4600634 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 55.0 | 6.21e-01 | 71.8% | 100.0% |
| 3275963 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 67.0 | 6.37e-01 | 89.7% | 91.1% |
| 3356981 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 66.0 | 6.61e-01 | 88.5% | 92.5% |
| 3060287 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.79 | 63.0 | 6.45e-01 | 91.0% | 88.0% |
| 3319740 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 65.0 | 6.33e-01 | 89.7% | 92.9% |
| 4380775 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.78 | 64.0 | 4.68e-01 | 88.5% | 58.5% |
| 224034 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 67.0 | 6.66e-01 | 94.9% | 91.4% |
| 4962391 | 144.1.1.11 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_2 | 0.77 | 56.0 | 5.37e-01 | 76.9% | 74.4% |
| 2819638 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.76 | 61.0 | 5.31e-01 | 85.9% | 66.4% |
| 3590520 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.76 | 61.0 | 6.10e-01 | 87.2% | 98.8% |
| 3299934 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 62.0 | 5.61e-01 | 89.7% | 78.1% |
| 3539881 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 60.0 | 6.16e-01 | 85.9% | 92.0% |
| 3765966 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 58.0 | 5.68e-01 | 83.3% | 81.2% |
| 3247155 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.74 | 53.0 | 5.74e-01 | 82.1% | 92.3% |
| 3994858 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.73 | 58.0 | 5.79e-01 | 87.2% | 82.5% |
| 3222017 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.73 | 60.0 | 5.75e-01 | 88.5% | 86.7% |
| 3178568 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.71 | 64.0 | 4.80e-01 | 100.0% | 53.5% |
| 3893524 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.71 | 54.0 | 5.67e-01 | 84.6% | 90.0% |
| 5081640 | 235.1.1.45 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108 | 0.70 | 60.0 | 4.47e-01 | 100.0% | 39.4% |
| 3621525 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.66 | 52.0 | 5.37e-01 | 85.9% | 98.7% |
| 4965305 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.61 | 42.0 | 3.51e-01 | 70.5% | 72.6% |
| 3917235 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.53 | 44.0 | 3.63e-01 | 93.6% | 64.8% |