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SRR1747065_scaffold_10_prodigal-single.1__X__X__00146
Bact-VirSRR1747065_scaffold_10_prodigal-single.1__X__X__00146
Identity
- Kingdom:
- phage
Quality
66.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-113_564-651
D2
high
residues 463-519
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 62.0 | 6.05e-01 | 84.2% | 96.8% |
| 3a1yA00 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.75 | 55.0 | 5.53e-01 | 82.5% | 77.6% |
| 4k22B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.75 | 50.0 | 3.26e-01 | 73.7% | 16.3% |
| 2rasA01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.73 | 63.0 | 4.40e-01 | 100.0% | 29.8% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.70 | 46.0 | 3.67e-01 | 71.9% | 32.5% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.70 | 48.0 | 3.57e-01 | 71.9% | 59.7% |
| 5c0yA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.67 | 44.0 | 3.76e-01 | 71.9% | 41.9% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.63 | 47.0 | 3.63e-01 | 82.5% | 86.1% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.62 | 53.0 | 3.97e-01 | 96.5% | 74.5% |
| 3e74A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 46.0 | 2.93e-01 | 93.0% | 53.2% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 41.0 | 3.58e-01 | 75.4% | 74.1% |
| 4nc7A00 | 1.10.10.1250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase, subunit delta, N-terminal domain | 0.57 | 44.0 | 4.06e-01 | 89.5% | 69.6% |
| 2ph5A02 | 3.30.360.30 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like | 0.57 | 50.0 | 3.16e-01 | 98.2% | 84.5% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 44.0 | 3.99e-01 | 96.5% | 59.3% |
| 2bbwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.10e-01 | 98.2% | 72.3% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 39.0 | 2.76e-01 | 87.7% | 35.9% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3961315 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.76 | 67.0 | 6.29e-01 | 100.0% | 82.9% |
| 3978934 | 101.1.2.826 ↗ | alpha arrays › HTH › HTH › winged helix domain › KfrA_N | 0.75 | 56.0 | 5.94e-01 | 93.0% | 90.0% |
| 4009124 | 639.2.1.5 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 | 0.75 | 59.0 | 5.88e-01 | 86.0% | 100.0% |
| 3602476 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.74 | 55.0 | 5.63e-01 | 82.5% | 81.8% |
| 3947132 | 101.1.1.109 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF2543 | 0.73 | 59.0 | 5.45e-01 | 100.0% | 69.3% |
| 5047067 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 64.0 | 5.61e-01 | 100.0% | 91.8% |
| 5048461 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 63.0 | 5.58e-01 | 100.0% | 91.8% |
| 3173335 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.72 | 56.0 | 5.52e-01 | 87.7% | 80.0% |
| 3554511 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.72 | 60.0 | 5.35e-01 | 93.0% | 85.0% |
| 4028797 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.72 | 59.0 | 5.74e-01 | 96.5% | 81.5% |
| 3404571 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.72 | 62.0 | 5.54e-01 | 96.5% | 87.5% |
| 3516468 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.71 | 54.0 | 5.08e-01 | 86.0% | 67.1% |
| 3490008 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 58.0 | 5.63e-01 | 91.2% | 81.5% |
| 3526391 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.71 | 56.0 | 4.06e-01 | 86.0% | 38.1% |
| 3472278 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.71 | 58.0 | 5.35e-01 | 91.2% | 70.7% |
| 3599725 | 1091.1.1.0 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 | 0.71 | 56.0 | 5.40e-01 | 94.7% | 76.9% |
| 5040366 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 59.0 | 5.88e-01 | 100.0% | 90.0% |
| 3914715 | 605.1.1.235 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › BicD | 0.70 | 45.0 | 4.14e-01 | 91.2% | 50.7% |
| 3711005 | 1091.1.1.0 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 | 0.69 | 58.0 | 5.75e-01 | 93.0% | 96.7% |
| 3727213 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 58.0 | 5.57e-01 | 94.7% | 92.3% |
| 3662905 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.69 | 54.0 | 5.55e-01 | 100.0% | 90.9% |
| 5049986 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 57.0 | 4.88e-01 | 94.7% | 89.5% |
| 5026703 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.69 | 58.0 | 3.48e-01 | 91.2% | 26.6% |
| 4093337 | 1091.1.1.0 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 | 0.68 | 56.0 | 5.74e-01 | 93.0% | 100.0% |
| 3436562 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 58.0 | 5.29e-01 | 94.7% | 88.0% |
| 3889516 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.68 | 59.0 | 4.84e-01 | 98.2% | 76.2% |
| 3876302 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.68 | 59.0 | 4.88e-01 | 100.0% | 66.7% |
| 4402085 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.66 | 56.0 | 5.17e-01 | 96.5% | 74.7% |
| 4426661 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.66 | 56.0 | 5.41e-01 | 96.5% | 84.6% |
| 3274011 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 56.0 | 5.38e-01 | 96.5% | 89.2% |
| 4988046 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 52.0 | 5.42e-01 | 96.5% | 100.0% |
| 3611141 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.65 | 53.0 | 4.74e-01 | 89.5% | 72.5% |
| 3287272 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 44.0 | 4.97e-01 | 78.9% | 100.0% |
| 3500575 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.64 | 51.0 | 5.09e-01 | 93.0% | 95.0% |
| 3120 | 163.1.1.1 ↗ | alpha arrays › Fertilization protein › Fertilization protein › Fertilization protein › Egg_lysin | 0.63 | 47.0 | 3.63e-01 | 82.5% | 86.1% |
| 3608869 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 55.0 | 4.62e-01 | 100.0% | 89.0% |
| 3222309 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 52.0 | 5.17e-01 | 96.5% | 100.0% |
| 3238440 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.62 | 52.0 | 5.10e-01 | 100.0% | 98.5% |
| 3702325 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 53.0 | 5.42e-01 | 98.2% | 100.0% |
| 3234731 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.62 | 52.0 | 5.03e-01 | 98.2% | 87.7% |
| 4103293 | 101.1.2.62 ↗ | alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD | 0.62 | 52.0 | 4.75e-01 | 100.0% | 92.5% |
| 3629401 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.61 | 50.0 | 4.76e-01 | 98.2% | 98.6% |
| 4322551 | 604.23.1.0 ↗ | alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain | 0.59 | 43.0 | 4.43e-01 | 86.0% | 80.0% |
| 3965373 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.59 | 51.0 | 4.79e-01 | 98.2% | 85.7% |
| 4257656 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.59 | 43.0 | 3.74e-01 | 78.9% | 52.2% |
| 5005930 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.58 | 39.0 | 2.39e-01 | 70.2% | 11.6% |
| 3289114 | 148.1.3.251 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 | 0.54 | 43.0 | 4.05e-01 | 89.5% | 71.4% |
D3
high
residues 701-787
Domain cluster:
rep: SRR1747056_scaffold_0_curated_closed_gap_prodigal-single.1__X__X__00012__D262-343
D4
medium
residues 115-214_549-562
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14890.12 best | Intein_splicing | 40.4 | 3.80e-10 | 85.1% | 57.4% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e2tB00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 81.0 | 6.96e-01 | 96.5% | 100.0% |
| 1zdeA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 84.0 | 7.33e-01 | 100.0% | 96.2% |
| 4lx3A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 73.0 | 7.81e-01 | 94.7% | 98.0% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 83.0 | 7.07e-01 | 99.1% | 98.8% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.88 | 84.0 | 7.74e-01 | 100.0% | 100.0% |
| 6vgwA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.86 | 80.0 | 7.33e-01 | 97.4% | 99.3% |
| 2lwyA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.85 | 80.0 | 7.39e-01 | 98.2% | 99.3% |
| 1dfaA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.75 | 68.0 | 5.51e-01 | 96.5% | 100.0% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4975578 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.92 | 87.0 | 6.29e-01 | 99.1% | 57.8% |
| 4872043 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.91 | 87.0 | 7.82e-01 | 100.0% | 99.3% |
| 5065032 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.91 | 85.0 | 7.27e-01 | 96.5% | 100.0% |
| 4977673 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.91 | 85.0 | 6.53e-01 | 97.4% | 100.0% |
| 5031634 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.91 | 87.0 | 7.55e-01 | 100.0% | 97.5% |
| 4993853 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.91 | 84.0 | 7.21e-01 | 96.5% | 100.0% |
| 4979631 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.90 | 84.0 | 7.49e-01 | 96.5% | 100.0% |
| 4971400 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.90 | 85.0 | 6.07e-01 | 99.1% | 53.9% |
| 4993480 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.90 | 84.0 | 7.37e-01 | 98.2% | 100.0% |
| 4930433 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.90 | 85.0 | 7.48e-01 | 99.1% | 100.0% |
| 5013937 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.89 | 83.0 | 7.18e-01 | 97.4% | 98.2% |
| 4975971 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 81.0 | 7.69e-01 | 94.7% | 100.0% |
| 5002632 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 84.0 | 7.49e-01 | 97.4% | 99.3% |
| 2524072 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.89 | 83.0 | 7.13e-01 | 98.2% | 100.0% |
| 5066389 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.89 | 83.0 | 6.83e-01 | 98.2% | 99.5% |
| 4948016 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 81.0 | 7.23e-01 | 94.7% | 99.3% |
| 4997604 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.89 | 84.0 | 7.19e-01 | 100.0% | 98.8% |
| 4943231 | 69.1.1.16 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › ATP-synt_ab | 0.89 | 84.0 | 7.07e-01 | 100.0% | 100.0% |
| 4993454 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 84.0 | 6.42e-01 | 100.0% | 99.1% |
| 4943244 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 81.0 | 6.91e-01 | 96.5% | 100.0% |
| 4993128 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 84.0 | 7.30e-01 | 99.1% | 99.4% |
| 4993808 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 81.0 | 7.37e-01 | 96.5% | 100.0% |
| 4779324 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 73.0 | 7.81e-01 | 94.7% | 98.0% |
| 5052154 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 82.0 | 7.05e-01 | 97.4% | 100.0% |
| 4992473 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.87 | 84.0 | 7.12e-01 | 100.0% | 94.1% |
| 4998394 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 76.0 | 6.76e-01 | 91.2% | 100.0% |
| 4940943 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.87 | 83.0 | 7.10e-01 | 100.0% | 100.0% |
| 4039971 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.87 | 83.0 | 7.00e-01 | 100.0% | 100.0% |
| 5013038 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 80.0 | 7.05e-01 | 97.4% | 99.4% |
| 4667152 | 69.1.1.3 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT | 0.87 | 83.0 | 7.30e-01 | 100.0% | 98.1% |
| 4565870 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 83.0 | 7.35e-01 | 100.0% | 98.7% |
| 4322985 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.87 | 81.0 | 5.54e-01 | 98.2% | 38.3% |
| 2445477 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.87 | 83.0 | 7.36e-01 | 100.0% | 92.9% |
| 3602222 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 78.0 | 6.06e-01 | 94.7% | 100.0% |
| 4405940 | 242.1.1.8 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3, Intein_splicing | 0.86 | 80.0 | 5.11e-01 | 97.4% | 46.4% |
| 4821446 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 72.0 | 7.09e-01 | 86.8% | 99.2% |
| 4586920 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 80.0 | 7.07e-01 | 97.4% | 100.0% |
| 4315406 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.86 | 79.0 | 6.62e-01 | 96.5% | 100.0% |
| 4945569 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 81.0 | 7.20e-01 | 100.0% | 98.7% |
| 2636473 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 81.0 | 7.39e-01 | 100.0% | 99.3% |
| 259963 | 69.1.1.3 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT | 0.85 | 80.0 | 7.39e-01 | 98.2% | 99.3% |
| 5028312 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.84 | 80.0 | 7.39e-01 | 100.0% | 99.3% |
| 3257888 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.84 | 78.0 | 7.02e-01 | 98.2% | 100.0% |
| 4999896 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 75.0 | 7.29e-01 | 94.7% | 96.8% |
| 4944478 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 70.0 | 6.91e-01 | 87.7% | 99.2% |
| 4996401 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 6.76e-01 | 98.2% | 99.4% |
| 4127166 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 77.0 | 6.86e-01 | 96.5% | 100.0% |
| 4993732 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 78.0 | 7.52e-01 | 99.1% | 100.0% |
| 4999902 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 76.0 | 6.89e-01 | 97.4% | 100.0% |
| 4283619 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 72.0 | 6.95e-01 | 92.1% | 100.0% |
| 4970868 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.81 | 72.0 | 6.94e-01 | 93.0% | 99.2% |
| 4045174 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.80 | 75.0 | 6.49e-01 | 100.0% | 99.4% |
| 1291738 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 68.0 | 6.94e-01 | 92.1% | 100.0% |
| 4993871 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 65.0 | 6.54e-01 | 88.6% | 91.3% |
| 4978364 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.76 | 63.0 | 6.36e-01 | 87.7% | 97.4% |
| 1758564 | 69.1.1.2 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint | 0.70 | 62.0 | 5.33e-01 | 94.7% | 97.1% |
D5
medium
residues 215-302
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.81 | 70.0 | 6.50e-01 | 95.5% | 75.5% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.64 | 52.0 | 5.36e-01 | 90.9% | 94.0% |
| 4phtY02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.60 | 25.0 | 2.90e-01 | 72.7% | 50.0% |
| 1dq3A02 | 3.30.160.90 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 27.0 | 2.88e-01 | 76.1% | 46.1% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.57 | 31.0 | 3.14e-01 | 76.1% | 49.5% |
| 7kfuC01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.56 | 23.0 | 2.55e-01 | 71.6% | 40.0% |
| 6g1nD01 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 31.0 | 3.23e-01 | 89.8% | 59.0% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.53 | 24.0 | 3.24e-01 | 70.5% | 89.7% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 32.0 | 2.91e-01 | 88.6% | 40.8% |
| 2od0A00 | 3.30.1460.30 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone | 0.51 | 35.0 | 3.34e-01 | 70.5% | 91.3% |
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 23.0 | 2.62e-01 | 73.9% | 53.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266965 | 378.1.2.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 | 0.87 | 62.0 | 7.28e-01 | 83.0% | 100.0% |
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.80 | 71.0 | 6.40e-01 | 94.3% | 82.6% |
| 2417924 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.80 | 34.0 | 3.49e-01 | 71.6% | 42.4% |
| 3965202 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.77 | 60.0 | 5.54e-01 | 98.9% | 65.5% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 56.0 | 6.05e-01 | 86.4% | 89.3% |
| 3539740 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.74 | 65.0 | 5.73e-01 | 97.7% | 66.4% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 49.0 | 5.06e-01 | 72.7% | 70.6% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.72 | 50.0 | 5.77e-01 | 83.0% | 98.5% |
| 5053631 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.72 | 63.0 | 5.85e-01 | 95.5% | 99.1% |
| 3312712 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 25.0 | 3.24e-01 | 76.1% | 58.0% |
| 5014724 | 295.1.1.51 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C | 0.63 | 34.0 | 3.24e-01 | 92.0% | 46.0% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.62 | 51.0 | 4.97e-01 | 94.3% | 81.4% |
| 3497972 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.62 | 31.0 | 3.22e-01 | 89.8% | 48.2% |
| 3786120 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.59 | 27.0 | 3.44e-01 | 80.7% | 72.0% |
| 3250994 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 24.0 | 2.75e-01 | 71.6% | 46.2% |
| 3990293 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 27.0 | 3.39e-01 | 80.7% | 70.9% |
| 3493703 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.55 | 27.0 | 3.54e-01 | 70.5% | 88.9% |
| 4929701 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.55 | 27.0 | 3.25e-01 | 90.9% | 70.0% |
| 5015133 | 4100.1.1.9 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 | 0.55 | 26.0 | 3.17e-01 | 90.9% | 68.3% |
| 4990102 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 27.0 | 3.50e-01 | 87.5% | 88.9% |
| 4351616 | 220.1.1.10 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog | 0.53 | 34.0 | 3.10e-01 | 93.2% | 46.7% |
| 5038003 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.53 | 28.0 | 3.56e-01 | 89.8% | 90.0% |
| 3176357 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.51 | 44.0 | 2.84e-01 | 100.0% | 46.0% |
| 3331838 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.51 | 27.0 | 3.44e-01 | 90.9% | 92.0% |
D6
medium
residues 303-385
D7
medium
residues 386-454