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SRR1747065_scaffold_10_prodigal-single.1__X__X__00214

Bact-Vir

SRR1747065_scaffold_10_prodigal-single.1__X__X__00214

Identity

Kingdom:
phage

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-95
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zuoB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 41.0 3.60e-01 76.3% 75.7%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 4.06e-01 94.6% 75.4%
2kafA00 3.40.30.150 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Coronavirus polyprotein cleavage domain 0.54 33.0 3.78e-01 73.1% 85.1%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.54 39.0 4.04e-01 80.6% 80.9%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 40.0 3.65e-01 80.6% 58.7%
6nyoA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 37.0 3.02e-01 74.2% 48.9%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 32.0 3.60e-01 98.9% 82.2%
3sokB00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.51 37.0 3.29e-01 78.5% 59.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606232 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 44.0 4.24e-01 79.6% 78.6%
4314842 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 40.0 3.87e-01 80.6% 64.8%
D2 high residues 110-160
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.58 46.0 3.93e-01 96.1% 76.6%
2j4bB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.55 44.0 3.45e-01 100.0% 64.7%
1ezjA01 1.10.287.320 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Viral phosphoprotein oligmorisation site domain 0.54 37.0 3.51e-01 76.5% 58.1%
2n7zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 38.0 3.21e-01 88.2% 45.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4293559 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.65 52.0 3.72e-01 96.1% 31.4%
3603198 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.63 51.0 3.63e-01 96.1% 31.4%
3554038 148.1.1.21 ↗ alpha arrays › Histone-like › Histone-related › Histone › SAGA-Tad1 0.63 45.0 4.18e-01 90.2% 60.0%
4393704 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 46.0 2.73e-01 88.2% 51.2%
3457663 192.29.1.178 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF28703 0.57 46.0 3.86e-01 100.0% 81.0%
5026673 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.53 42.0 3.47e-01 86.3% 62.2%