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SRR1747065_scaffold_10_prodigal-single.1__X__X__00218
Bact-VirSRR1747065_scaffold_10_prodigal-single.1__X__X__00218
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-112
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02661.24 best | Fic | 31.8 | 3.00e-07 | 57.9% | 34.4% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.86 | 81.0 | 7.72e-01 | 100.0% | 92.6% |
| 4u04A02 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.79 | 73.0 | 5.63e-01 | 100.0% | 58.1% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.62 | 46.0 | 4.65e-01 | 78.5% | 87.6% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 53.0 | 3.96e-01 | 100.0% | 63.9% |
| 6a7hA01 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.58 | 44.0 | 4.16e-01 | 81.3% | 71.2% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.56 | 38.0 | 3.99e-01 | 70.1% | 83.8% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 41.0 | 4.51e-01 | 100.0% | 100.0% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 39.0 | 4.06e-01 | 92.5% | 78.8% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 40.0 | 4.14e-01 | 92.5% | 83.5% |
| 3mzvA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 47.0 | 3.52e-01 | 100.0% | 50.5% |
| 5xn6D00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 47.0 | 3.63e-01 | 100.0% | 61.3% |
| 1nktA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 47.0 | 3.47e-01 | 97.2% | 62.5% |
| 3cjdA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 43.0 | 3.64e-01 | 86.9% | 73.6% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 43.0 | 3.92e-01 | 88.8% | 93.1% |
| 3q2qA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 46.0 | 3.32e-01 | 96.3% | 51.9% |
| 5kd5A01 | 1.10.390.30 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Peptidase M60, enhancin-like domain 3 | 0.52 | 42.0 | 3.56e-01 | 87.9% | 83.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962046 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.89 | 85.0 | 7.99e-01 | 100.0% | 93.6% |
| 3291594 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.89 | 85.0 | 7.85e-01 | 100.0% | 90.0% |
| 5004520 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.88 | 84.0 | 8.15e-01 | 100.0% | 95.7% |
| 5021433 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.88 | 83.0 | 7.80e-01 | 100.0% | 94.4% |
| 4966457 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.86 | 81.0 | 7.99e-01 | 100.0% | 93.8% |
| 5005301 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.86 | 82.0 | 7.97e-01 | 100.0% | 96.5% |
| 4937383 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.85 | 80.0 | 7.55e-01 | 100.0% | 94.4% |
| 5016571 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.80 | 74.0 | 5.33e-01 | 100.0% | 53.3% |
| 4951896 | 4040.1.1.7 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic_N | 0.80 | 74.0 | 5.30e-01 | 100.0% | 53.3% |
| 4968720 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.79 | 73.0 | 5.34e-01 | 100.0% | 56.3% |
| 4033963 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.79 | 72.0 | 5.21e-01 | 100.0% | 53.4% |
| 5057213 | 4040.1.1.7 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic_N | 0.79 | 73.0 | 5.19e-01 | 100.0% | 51.5% |
| 4962219 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.78 | 72.0 | 5.19e-01 | 100.0% | 52.4% |
| 3872483 | 4040.1.1.0 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like | 0.78 | 72.0 | 5.61e-01 | 100.0% | 62.7% |
| 4940660 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.78 | 71.0 | 5.45e-01 | 100.0% | 59.1% |
| 3974750 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.76 | 70.0 | 5.04e-01 | 100.0% | 55.9% |
| 4352327 | 4040.1.1.5 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › DUF1612 | 0.70 | 63.0 | 4.84e-01 | 100.0% | 50.0% |
| 3823163 | 1075.5.1.5 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 | 0.58 | 42.0 | 3.34e-01 | 76.6% | 75.7% |
| 4117026 | 5069.1.1.56 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PF27518 | 0.55 | 39.0 | 3.08e-01 | 72.9% | 75.2% |
| 3508877 | 3415.1.1.1 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Nucleos_tra2_N,Nucleos_tra2_C,Gate | 0.55 | 42.0 | 2.91e-01 | 82.2% | 67.3% |
| 3676359 | 563.1.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.54 | 37.0 | 3.81e-01 | 71.0% | 75.0% |
| 3253633 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 39.0 | 3.70e-01 | 95.3% | 64.6% |
| 5054373 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.51 | 43.0 | 3.65e-01 | 95.3% | 58.2% |
| 4934869 | 4021.1.1.2 ↗ | alpha arrays › alpha-helical domain in 2-methylcitrate dehydratase PrpD › alpha-helical domain in 2-methylcitrate dehydratase PrpD › alpha-helical domain in 2-methylcitrate dehydratase PrpD › MmgE_PrpD_N | 0.51 | 43.0 | 3.14e-01 | 94.4% | 66.9% |
| 3581915 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 43.0 | 4.27e-01 | 92.5% | 89.1% |