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SRR1747065_scaffold_124_prodigal-single.1__X__X__00017
Bact-VirSRR1747065_scaffold_124_prodigal-single.1__X__X__00017
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 35-106
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ue1B01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 45.0 | 3.67e-01 | 100.0% | 61.8% |
| 3pt9A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 2.74e-01 | 90.3% | 83.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3962456 | 7059.1.1.0 ↗ | a+b complex topology › SatS C-terminal domain › SatS C-terminal domain › SatS C-terminal domain | 0.57 | 45.0 | 3.38e-01 | 100.0% | 33.7% |
| 2502890 | 7059.1.1.1 ↗ | a+b complex topology › SatS C-terminal domain › SatS C-terminal domain › SatS C-terminal domain › PF31034 | 0.56 | 44.0 | 3.32e-01 | 100.0% | 33.7% |
| 4089567 | 6.1.1.7 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CDtoxinA | 0.53 | 32.0 | 2.68e-01 | 97.2% | 30.7% |
| 3383054 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.51 | 25.0 | 3.13e-01 | 86.1% | 88.6% |
D2
medium
residues 107-182
Domain cluster:
rep: SRR1747065_scaffold_38_prodigal-single.1__X__X__00183__D82-156
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 47.0 | 4.86e-01 | 71.1% | 78.9% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 45.0 | 4.74e-01 | 71.1% | 85.3% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.63 | 43.0 | 2.83e-01 | 71.1% | 17.2% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 46.0 | 4.14e-01 | 77.6% | 74.3% |
| 2yt4A03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 44.0 | 4.01e-01 | 77.6% | 54.8% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 45.0 | 4.20e-01 | 77.6% | 63.9% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.62 | 35.0 | 2.97e-01 | 93.4% | 33.1% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.60 | 40.0 | 3.94e-01 | 71.1% | 64.0% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.59 | 40.0 | 3.66e-01 | 71.1% | 54.2% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.56 | 33.0 | 3.89e-01 | 93.4% | 97.7% |
| 3zm6A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.55 | 43.0 | 3.18e-01 | 88.2% | 41.3% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.52 | 36.0 | 3.42e-01 | 71.1% | 82.2% |
| 7mwzD01 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.51 | 38.0 | 2.91e-01 | 78.9% | 63.9% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 38.0 | 3.24e-01 | 77.6% | 70.8% |
| 3p0lD00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 35.0 | 2.68e-01 | 71.1% | 49.2% |
| 3liuA02 | 2.60.40.3690 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 38.0 | 2.90e-01 | 86.8% | 90.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3250471 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.76 | 52.0 | 4.83e-01 | 71.1% | 61.1% |
| 4952072 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.71 | 45.0 | 5.35e-01 | 71.1% | 100.0% |
| 3299579 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 48.0 | 5.02e-01 | 72.4% | 81.4% |
| 3481288 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 57.0 | 4.92e-01 | 89.5% | 72.2% |
| 4156379 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.68 | 47.0 | 3.63e-01 | 71.1% | 52.1% |
| 3373320 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.67 | 45.0 | 4.73e-01 | 71.1% | 80.0% |
| 3660311 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.66 | 45.0 | 4.49e-01 | 71.1% | 72.5% |
| 3517153 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.64 | 43.0 | 4.30e-01 | 71.1% | 66.3% |
| 3286982 | 330.6.1.0 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain | 0.62 | 42.0 | 3.75e-01 | 72.4% | 50.0% |
| 3709800 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 43.0 | 3.98e-01 | 72.4% | 60.0% |
| 4609498 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.61 | 42.0 | 4.22e-01 | 72.4% | 72.5% |
| 4440404 | 4325.1.1.15 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26354 | 0.61 | 42.0 | 3.67e-01 | 72.4% | 47.5% |
| 3796107 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.59 | 34.0 | 3.23e-01 | 93.4% | 45.6% |
| 3715664 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 41.0 | 3.48e-01 | 72.4% | 93.8% |
| 4667824 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 41.0 | 3.60e-01 | 76.3% | 46.0% |
| 3592743 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 39.0 | 3.93e-01 | 71.1% | 72.5% |
| 4043415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 50.0 | 3.12e-01 | 100.0% | 27.0% |
| 3666905 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.54 | 31.0 | 3.32e-01 | 93.4% | 63.1% |
| 3544618 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.52 | 36.0 | 3.48e-01 | 71.1% | 82.4% |
| 3404272 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 39.0 | 3.16e-01 | 84.2% | 59.4% |
| 4995755 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 29.0 | 3.46e-01 | 94.7% | 95.6% |
| 3601605 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.50 | 38.0 | 2.83e-01 | 88.2% | 60.7% |