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SRR1747065_scaffold_124_prodigal-single.1__X__X__00023

Bact-Vir

SRR1747065_scaffold_124_prodigal-single.1__X__X__00023

Identity

Kingdom:
phage

Quality

48.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-176
PDB
Domain cluster: rep: SRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00087__D52-158
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l1oC02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 18.0 3.44e-01 71.4% 78.9%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 18.0 3.36e-01 72.9% 85.7%
2kjfA00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.57 25.0 3.46e-01 72.9% 86.7%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.55 19.0 2.71e-01 76.7% 61.3%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.53 36.0 4.09e-01 85.0% 97.8%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 29.0 3.68e-01 78.9% 93.5%
3kz5E00 6.10.140.1550 Special › Helix non-globular › Helix Hairpins › 0.51 21.0 3.21e-01 79.7% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932429 375.1.1.13 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.65 20.0 2.84e-01 91.0% 54.0%
3712974 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.60 36.0 4.31e-01 79.7% 90.6%
3980811 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.56 20.0 2.84e-01 78.9% 63.3%