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SRR1747065_scaffold_124_prodigal-single.1__X__X__00028
Bact-VirSRR1747065_scaffold_124_prodigal-single.1__X__X__00028
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-107
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 29.0 | 8.70e-07 | 37.8% | 73.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.86 | 75.0 | 7.29e-01 | 100.0% | 84.9% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 34.0 | 3.96e-01 | 76.5% | 87.1% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 31.0 | 3.55e-01 | 92.9% | 76.1% |
| 2ltsA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 32.0 | 3.35e-01 | 79.6% | 66.3% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.52 | 25.0 | 2.87e-01 | 82.7% | 57.7% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.51 | 34.0 | 3.60e-01 | 92.9% | 77.0% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 28.0 | 3.23e-01 | 92.9% | 79.0% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.76e-01 | 92.9% | 89.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.78 | 72.0 | 6.84e-01 | 99.0% | 88.7% |
| 3539740 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.76 | 61.0 | 5.58e-01 | 87.8% | 66.4% |
| 3623169 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 42.0 | 4.12e-01 | 74.5% | 72.4% |
| 3620016 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 29.0 | 3.66e-01 | 92.9% | 85.5% |
| 1557343 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.55 | 34.0 | 3.96e-01 | 76.5% | 87.1% |
| 3485727 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 36.0 | 3.66e-01 | 85.7% | 67.4% |
| 5073631 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.53 | 37.0 | 2.80e-01 | 73.5% | 91.5% |
| 4954224 | 4.1.1.182 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2097 | 0.53 | 36.0 | 3.73e-01 | 71.4% | 98.9% |
| 4243492 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.52 | 29.0 | 3.59e-01 | 80.6% | 90.0% |
| 3373308 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 31.0 | 3.52e-01 | 86.7% | 86.2% |
| 4226251 | 375.1.1.252 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 | 0.51 | 28.0 | 3.42e-01 | 86.7% | 86.7% |
| 4993449 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.50 | 35.0 | 3.47e-01 | 72.4% | 68.6% |
| 4990492 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 27.0 | 3.54e-01 | 87.8% | 100.0% |
| 3614906 | 4.26.1.8 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 | 0.50 | 33.0 | 3.73e-01 | 91.8% | 92.9% |
D2
high
residues 116-171
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.61 | 56.0 | 4.87e-01 | 100.0% | 68.3% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.61 | 37.0 | 4.30e-01 | 98.2% | 91.9% |
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 47.0 | 3.34e-01 | 89.3% | 32.3% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 50.0 | 5.08e-01 | 100.0% | 100.0% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 45.0 | 3.98e-01 | 98.2% | 97.9% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.53 | 43.0 | 3.96e-01 | 100.0% | 91.7% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 41.0 | 3.31e-01 | 94.6% | 88.9% |
| 1fw8A01 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.53 | 37.0 | 2.55e-01 | 76.8% | 97.3% |
| 4aktB00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.52 | 37.0 | 2.36e-01 | 75.0% | 44.6% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.51 | 34.0 | 3.57e-01 | 100.0% | 79.6% |
| 2jmkA00 | 3.30.420.600 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Thermoplasma acidophilum protein TA0956 | 0.51 | 37.0 | 3.10e-01 | 80.4% | 94.5% |
| 3vasA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 39.0 | 2.58e-01 | 91.1% | 94.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4519945 | 101.1.14.4 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 | 0.83 | 73.0 | 7.46e-01 | 100.0% | 98.1% |
| 3954522 | 3108.1.1.0 ↗ | a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 | 0.73 | 63.0 | 5.93e-01 | 100.0% | 91.4% |
| 1198183 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.67 | 50.0 | 4.18e-01 | 80.4% | 66.0% |
| 3923587 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 44.0 | 4.76e-01 | 100.0% | 86.7% |
| 3245932 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 44.0 | 4.86e-01 | 100.0% | 88.9% |
| 3236762 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 52.0 | 4.76e-01 | 98.2% | 81.3% |
| 1560729 | 1.1.5.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF | 0.59 | 40.0 | 3.00e-01 | 73.2% | 27.1% |
| 3807425 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.54 | 33.0 | 3.17e-01 | 94.6% | 49.2% |
| 3929725 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.54 | 47.0 | 4.00e-01 | 100.0% | 73.7% |
| 3408369 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.54 | 41.0 | 3.74e-01 | 82.1% | 70.7% |
| 4944611 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.53 | 41.0 | 2.81e-01 | 100.0% | 22.2% |
| 3342794 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.53 | 44.0 | 3.90e-01 | 100.0% | 68.9% |
| 3688623 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.51 | 42.0 | 2.92e-01 | 100.0% | 96.1% |
| 4019819 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.51 | 38.0 | 2.62e-01 | 87.5% | 27.8% |
| 3819740 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.51 | 44.0 | 3.83e-01 | 100.0% | 68.9% |
| 3703272 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 34.0 | 3.49e-01 | 94.6% | 72.7% |