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SRR1747065_scaffold_28_prodigal-single.1__X__X__00006
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00006
Identity
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-115
Domain cluster:
rep: SRR1747030_scaffold_3_prodigal-single.1__X__X__00265__D59-156
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27269.1 best | YonG_N | 51.0 | 2.20e-13 | 87.7% | 95.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.63 | 37.0 | 4.08e-01 | 74.6% | 73.0% |
| 3ezqA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 35.0 | 3.58e-01 | 74.6% | 54.8% |
| 1wxpA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 34.0 | 3.93e-01 | 73.7% | 72.6% |
| 1ichA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 36.0 | 4.09e-01 | 72.8% | 75.9% |
| 1ukcB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 45.0 | 2.96e-01 | 83.3% | 80.1% |
| 2ms7A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 33.0 | 3.46e-01 | 73.7% | 63.7% |
| 3dxlA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.54 | 41.0 | 3.80e-01 | 82.5% | 72.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3881145 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.64 | 37.0 | 4.14e-01 | 73.7% | 73.3% |
| 3910094 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.63 | 37.0 | 4.08e-01 | 75.4% | 71.0% |
| 4913739 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.62 | 35.0 | 3.98e-01 | 73.7% | 72.4% |
| 4212920 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.55 | 38.0 | 3.62e-01 | 71.1% | 94.8% |
| 3528914 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.53 | 38.0 | 3.86e-01 | 79.8% | 76.4% |
D2
medium
residues 130-225
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hk3A03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.75 | 53.0 | 5.46e-01 | 74.0% | 98.9% |
| 2nwbA02 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 49.0 | 3.60e-01 | 71.9% | 79.7% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.69 | 49.0 | 4.58e-01 | 75.0% | 61.9% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 47.0 | 4.67e-01 | 72.9% | 70.6% |
| 1qkrB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 55.0 | 4.44e-01 | 89.6% | 91.1% |
| 3ddlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.64 | 53.0 | 3.94e-01 | 90.6% | 63.5% |
| 5gl7A01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.64 | 51.0 | 4.20e-01 | 84.4% | 99.4% |
| 5zw7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.62 | 47.0 | 4.00e-01 | 79.2% | 64.5% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.60 | 47.0 | 4.05e-01 | 81.2% | 57.5% |
| 1bf3A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 41.0 | 3.16e-01 | 75.0% | 90.0% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 39.0 | 4.15e-01 | 71.9% | 81.6% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 40.0 | 3.52e-01 | 71.9% | 80.9% |
| 2d4uB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.55 | 45.0 | 3.89e-01 | 89.6% | 58.7% |
| 3k53A02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 40.0 | 4.02e-01 | 78.1% | 96.9% |
| 1b68A00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.55 | 41.0 | 3.67e-01 | 80.2% | 76.8% |
| 3ufbA01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.54 | 39.0 | 3.36e-01 | 75.0% | 89.9% |
| 3d2eA06 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 39.0 | 3.75e-01 | 79.2% | 66.4% |
| 4m0mA04 | 1.20.1270.440 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 42.0 | 3.95e-01 | 87.5% | 70.9% |
| 8befJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.51 | 40.0 | 3.35e-01 | 89.6% | 47.6% |
| 2j4bB00 | 1.25.40.500 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain | 0.51 | 39.0 | 3.53e-01 | 83.3% | 100.0% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 35.0 | 3.45e-01 | 71.9% | 81.6% |
| 3pmmA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 44.0 | 2.98e-01 | 99.0% | 76.9% |
| 3rkoG00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 39.0 | 3.92e-01 | 89.6% | 83.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225376 | 601.1.3.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 | 0.76 | 53.0 | 4.51e-01 | 71.9% | 96.7% |
| 3991191 | 601.1.2.6 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B | 0.75 | 52.0 | 4.39e-01 | 70.8% | 95.3% |
| 4997668 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.70 | 52.0 | 3.24e-01 | 77.1% | 21.8% |
| 5025813 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.69 | 49.0 | 4.71e-01 | 74.0% | 98.2% |
| 4034204 | 5069.1.1.5 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_II | 0.68 | 47.0 | 3.78e-01 | 70.8% | 67.4% |
| 4320306 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.67 | 46.0 | 4.45e-01 | 70.8% | 94.5% |
| 4242072 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.67 | 51.0 | 4.75e-01 | 78.1% | 98.3% |
| 3494933 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.65 | 47.0 | 3.16e-01 | 72.9% | 21.8% |
| 4956912 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.65 | 50.0 | 3.37e-01 | 81.2% | 45.1% |
| 4263341 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.64 | 48.0 | 4.49e-01 | 77.1% | 97.4% |
| 4952876 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 44.0 | 4.55e-01 | 70.8% | 88.9% |
| 5066927 | 4002.1.1.5 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › ADH_Fe_C | 0.61 | 47.0 | 3.77e-01 | 80.2% | 88.3% |
| 3407400 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.60 | 42.0 | 3.36e-01 | 71.9% | 45.6% |
| 4937169 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.60 | 43.0 | 4.16e-01 | 75.0% | 97.3% |
| 4942626 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.60 | 42.0 | 4.15e-01 | 71.9% | 72.0% |
| 3741234 | 605.2.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N | 0.60 | 45.0 | 4.23e-01 | 79.2% | 93.9% |
| 3693465 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.60 | 44.0 | 4.14e-01 | 79.2% | 94.2% |
| 4262851 | 3579.1.1.0 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J | 0.59 | 44.0 | 3.82e-01 | 79.2% | 95.3% |
| 4582075 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.59 | 41.0 | 4.23e-01 | 77.1% | 76.7% |
| 4029286 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.58 | 42.0 | 3.85e-01 | 76.0% | 66.2% |
| 4304756 | 605.2.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N | 0.58 | 41.0 | 3.99e-01 | 74.0% | 97.3% |
| 4043484 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.58 | 42.0 | 4.05e-01 | 76.0% | 97.3% |
| 4027787 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.58 | 42.0 | 3.42e-01 | 76.0% | 45.9% |
| 5024547 | 5051.1.1.2 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease | 0.55 | 47.0 | 3.00e-01 | 91.7% | 78.4% |
| 4300676 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.55 | 41.0 | 4.00e-01 | 81.2% | 96.4% |
| 4306757 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.55 | 35.0 | 3.47e-01 | 72.9% | 60.0% |
| 3274908 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.55 | 40.0 | 3.52e-01 | 79.2% | 54.5% |
| 4654983 | 605.2.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N | 0.54 | 41.0 | 3.96e-01 | 81.2% | 96.4% |
| 3447427 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.54 | 39.0 | 3.50e-01 | 77.1% | 60.7% |
| 4598079 | 5050.1.1.23 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CLN3 | 0.54 | 41.0 | 3.22e-01 | 81.2% | 61.0% |
| 3373039 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.52 | 42.0 | 3.98e-01 | 87.5% | 86.1% |
| 2740253 | 3579.1.1.1 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3 | 0.51 | 38.0 | 3.59e-01 | 85.4% | 64.4% |
| 4276585 | 3579.1.1.1 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3 | 0.50 | 39.0 | 3.09e-01 | 88.5% | 39.5% |
D3
medium
residues 238-275
Domain cluster:
representative