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SRR1747065_scaffold_28_prodigal-single.1__X__X__00012
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00012
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 104-181
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 36.0 | 3.71e-01 | 100.0% | 60.8% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.60 | 47.0 | 4.33e-01 | 100.0% | 66.0% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 34.0 | 3.60e-01 | 80.8% | 63.4% |
| 2vugA05 | 3.30.70.3360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 35.0 | 4.19e-01 | 100.0% | 97.9% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.57 | 41.0 | 3.64e-01 | 100.0% | 50.4% |
| 6vbkA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.57 | 49.0 | 4.37e-01 | 100.0% | 65.8% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 49.0 | 3.87e-01 | 100.0% | 58.1% |
| 2if1A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.55 | 34.0 | 2.97e-01 | 100.0% | 38.1% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.55 | 46.0 | 4.16e-01 | 100.0% | 67.3% |
| 2jt1A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.62e-01 | 96.2% | 70.4% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 44.0 | 4.05e-01 | 100.0% | 67.0% |
| 3jb9H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 34.0 | 3.47e-01 | 80.8% | 65.8% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.53 | 31.0 | 3.42e-01 | 75.6% | 74.6% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 46.0 | 4.08e-01 | 100.0% | 68.9% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.53 | 43.0 | 3.78e-01 | 100.0% | 58.4% |
| 3a2pA00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.52 | 41.0 | 2.60e-01 | 91.0% | 64.2% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 45.0 | 3.89e-01 | 100.0% | 64.3% |
| 6diiL01 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.51 | 40.0 | 2.58e-01 | 91.0% | 55.7% |
| 3r4kA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 44.0 | 3.42e-01 | 100.0% | 68.7% |
| 2g7uC02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 44.0 | 3.41e-01 | 100.0% | 69.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4114061 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.67 | 44.0 | 4.00e-01 | 98.7% | 50.5% |
| 4552342 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.67 | 45.0 | 3.98e-01 | 100.0% | 49.1% |
| 5037173 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 42.0 | 3.93e-01 | 100.0% | 52.6% |
| 4542561 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.66 | 44.0 | 3.93e-01 | 100.0% | 49.1% |
| 4209527 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.66 | 44.0 | 3.93e-01 | 100.0% | 49.1% |
| 4289955 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 44.0 | 3.85e-01 | 100.0% | 47.0% |
| 4638448 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 44.0 | 3.97e-01 | 100.0% | 51.4% |
| 3974181 | 1.1.5.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 | 0.63 | 43.0 | 4.15e-01 | 100.0% | 61.1% |
| 4618288 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.61 | 44.0 | 4.42e-01 | 100.0% | 74.7% |
| 3965594 | 1.1.13.53 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 | 0.60 | 40.0 | 3.82e-01 | 100.0% | 57.9% |
| 4164205 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.60 | 43.0 | 4.36e-01 | 100.0% | 75.6% |
| 3387360 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 36.0 | 3.57e-01 | 100.0% | 56.5% |
| 3670468 | 4.1.1.332 ↗ | beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 | 0.58 | 43.0 | 3.63e-01 | 84.6% | 46.9% |
| 4081025 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.58 | 48.0 | 3.37e-01 | 100.0% | 27.5% |
| 4021801 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 52.0 | 3.38e-01 | 100.0% | 55.8% |
| 4016655 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.57 | 51.0 | 3.33e-01 | 100.0% | 56.2% |
| 4316025 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.56 | 50.0 | 3.63e-01 | 100.0% | 52.3% |
| 5043521 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.56 | 49.0 | 4.16e-01 | 100.0% | 67.4% |
| 4382946 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.56 | 46.0 | 3.43e-01 | 100.0% | 34.0% |
| 4648999 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 49.0 | 3.54e-01 | 100.0% | 50.9% |
| 3347068 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 43.0 | 3.26e-01 | 100.0% | 32.9% |
| 4610038 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 45.0 | 3.26e-01 | 100.0% | 30.6% |
| 5014541 | 5090.1.1.11 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N | 0.54 | 48.0 | 4.21e-01 | 100.0% | 72.5% |
| 4154078 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 47.0 | 3.47e-01 | 100.0% | 35.8% |
| 4983682 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.54 | 47.0 | 3.95e-01 | 100.0% | 96.4% |
| 3286458 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 46.0 | 3.98e-01 | 100.0% | 60.0% |
| 3658804 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 43.0 | 3.87e-01 | 100.0% | 60.9% |
| 1108188 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.53 | 46.0 | 4.03e-01 | 100.0% | 73.8% |
| 4636051 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.52 | 39.0 | 3.63e-01 | 97.4% | 61.9% |
| 4655335 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.52 | 45.0 | 3.32e-01 | 100.0% | 37.3% |
| 3788176 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.52 | 35.0 | 2.59e-01 | 70.5% | 89.1% |
| 5007802 | 331.4.1.36 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27851 | 0.52 | 40.0 | 4.02e-01 | 100.0% | 82.5% |
| 3591038 | 886.1.1.0 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain | 0.51 | 45.0 | 3.76e-01 | 100.0% | 97.1% |
| 4960378 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.51 | 45.0 | 3.67e-01 | 100.0% | 66.9% |
| 3619535 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.50 | 40.0 | 3.60e-01 | 100.0% | 61.1% |
| 3288278 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.50 | 41.0 | 3.50e-01 | 92.3% | 77.0% |
| 3980899 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.50 | 42.0 | 3.79e-01 | 100.0% | 67.3% |
D2
medium
residues 1-101
Domain cluster:
representative
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.76 | 41.0 | 5.44e-01 | 75.2% | 98.2% |
| 3786547 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.64 | 43.0 | 4.25e-01 | 82.2% | 65.7% |
| 3735267 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 35.0 | 3.79e-01 | 78.2% | 68.2% |
| 4131100 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.52 | 37.0 | 3.34e-01 | 81.2% | 54.8% |
| 3496776 | 1.1.8.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C | 0.51 | 39.0 | 3.37e-01 | 82.2% | 71.9% |