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SRR1747065_scaffold_28_prodigal-single.1__X__X__00015
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00015
Identity
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-109
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 34.0 | 3.72e-01 | 71.0% | 52.2% |
| 3khkB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.65 | 35.0 | 3.02e-01 | 80.4% | 34.6% |
| 3b8pA00 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.63 | 57.0 | 4.60e-01 | 100.0% | 58.5% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 32.0 | 3.26e-01 | 71.0% | 50.0% |
| 1u5tB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 33.0 | 3.67e-01 | 71.0% | 65.9% |
| 5jszA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 37.0 | 2.78e-01 | 88.8% | 23.6% |
| 3dluA00 | 3.30.56.30 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit | 0.58 | 46.0 | 4.88e-01 | 93.5% | 95.8% |
| 1l9aA00 | 3.30.56.30 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit | 0.58 | 43.0 | 4.74e-01 | 87.9% | 97.7% |
| 3f6tA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 44.0 | 3.95e-01 | 88.8% | 58.1% |
| 2zy2A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 45.0 | 4.08e-01 | 95.3% | 60.1% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 42.0 | 4.50e-01 | 94.4% | 87.4% |
| 3gruA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.57 | 34.0 | 3.75e-01 | 84.1% | 73.3% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 4.32e-01 | 85.0% | 81.6% |
| 1k3xA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 35.0 | 3.33e-01 | 94.4% | 51.2% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.57 | 38.0 | 2.91e-01 | 91.6% | 28.8% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.56 | 39.0 | 3.08e-01 | 71.0% | 92.2% |
| 1kvnA00 | 3.30.56.30 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit | 0.55 | 46.0 | 4.74e-01 | 98.1% | 96.2% |
| 2oikA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.55 | 42.0 | 3.89e-01 | 83.2% | 91.4% |
| 2debA03 | 3.30.559.70 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 | 0.54 | 45.0 | 3.40e-01 | 94.4% | 82.3% |
| 1vkvA01 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.54 | 43.0 | 3.63e-01 | 86.0% | 96.1% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 3.91e-01 | 85.0% | 79.6% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.52 | 37.0 | 4.06e-01 | 75.7% | 100.0% |
| 3w0fA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 41.0 | 3.82e-01 | 88.8% | 66.9% |
| 4axvA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 40.0 | 3.21e-01 | 86.9% | 78.8% |
| 1k0rA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.51 | 42.0 | 4.41e-01 | 90.7% | 100.0% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.50 | 36.0 | 3.71e-01 | 85.0% | 79.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 139445 | 622.4.1.1 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 | 0.73 | 34.0 | 3.57e-01 | 71.0% | 47.5% |
| 3743063 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.69 | 35.0 | 3.67e-01 | 75.7% | 53.0% |
| 4946547 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 42.0 | 4.08e-01 | 74.8% | 61.7% |
| 5074195 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.61 | 48.0 | 5.15e-01 | 86.9% | 97.8% |
| 3364871 | 3711.1.1.4 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 | 0.61 | 53.0 | 4.16e-01 | 95.3% | 82.2% |
| 5030700 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.59 | 46.0 | 4.93e-01 | 86.0% | 97.8% |
| 3585180 | 109.4.1.1316 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C | 0.59 | 47.0 | 2.91e-01 | 85.0% | 26.7% |
| 4980754 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 38.0 | 3.24e-01 | 71.0% | 43.6% |
| 3401247 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 40.0 | 4.30e-01 | 86.0% | 84.9% |
| 4978893 | 3755.3.1.632 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin | 0.57 | 36.0 | 3.27e-01 | 74.8% | 49.3% |
| 5058661 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.55 | 44.0 | 4.20e-01 | 86.9% | 86.2% |
| 4986712 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.55 | 42.0 | 4.39e-01 | 91.6% | 90.5% |
| 3587173 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 39.0 | 4.12e-01 | 74.8% | 100.0% |
| 3358900 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.54 | 34.0 | 3.22e-01 | 97.2% | 50.4% |
| 3545310 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.54 | 32.0 | 3.24e-01 | 98.1% | 57.3% |
| 3247392 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 35.0 | 3.13e-01 | 71.0% | 48.0% |
| 4240852 | 320.4.1.1 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › TIMELESS_C | 0.53 | 38.0 | 3.53e-01 | 74.8% | 68.1% |
| 4675783 | 2004.1.1.1063 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF2326 | 0.52 | 41.0 | 2.87e-01 | 86.0% | 38.5% |
| 3339462 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 45.0 | 3.21e-01 | 95.3% | 72.5% |
| 5083845 | 2.5.1.1 ↗ | beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase | 0.51 | 42.0 | 3.44e-01 | 91.6% | 92.1% |
| 5060856 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.51 | 35.0 | 3.30e-01 | 70.1% | 71.1% |
| 3958843 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.51 | 37.0 | 3.75e-01 | 86.0% | 78.1% |
| 3496820 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.51 | 44.0 | 3.07e-01 | 97.2% | 71.1% |
| 4946106 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 41.0 | 3.00e-01 | 89.7% | 31.8% |