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SRR1747065_scaffold_28_prodigal-single.1__X__X__00018

Bact-Vir

SRR1747065_scaffold_28_prodigal-single.1__X__X__00018

Identity

Kingdom:
phage

Quality

84.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 40-111
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.80 70.0 6.23e-01 94.4% 100.0%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.80 74.0 6.21e-01 100.0% 93.0%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.79 64.0 6.86e-01 97.2% 98.4%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 65.0 5.16e-01 100.0% 77.6%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.72 57.0 5.29e-01 91.7% 67.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.72 64.0 5.48e-01 100.0% 69.2%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.71 62.0 6.06e-01 95.8% 100.0%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 53.0 3.61e-01 100.0% 22.6%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.70 61.0 5.37e-01 100.0% 90.8%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 61.0 4.02e-01 100.0% 33.4%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 58.0 4.86e-01 100.0% 56.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 39.0 4.09e-01 93.1% 64.6%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 57.0 5.11e-01 100.0% 68.6%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 59.0 5.34e-01 100.0% 78.6%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.64 53.0 4.88e-01 91.7% 73.4%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 56.0 5.17e-01 100.0% 76.1%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.64 49.0 3.81e-01 83.3% 86.0%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 56.0 4.75e-01 100.0% 68.9%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.64 51.0 4.89e-01 93.1% 74.7%
4lk4A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 55.0 4.66e-01 100.0% 70.4%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 47.0 4.19e-01 81.9% 65.7%
2asbA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 35.0 3.54e-01 91.7% 52.0%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 47.0 4.31e-01 83.3% 61.9%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 47.0 3.80e-01 83.3% 73.2%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.60 50.0 4.34e-01 91.7% 76.1%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 52.0 4.77e-01 100.0% 77.8%
3mwbA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 43.0 3.90e-01 76.4% 95.8%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.59 45.0 3.53e-01 83.3% 47.8%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 46.0 4.09e-01 88.9% 78.0%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 4.29e-01 84.7% 90.8%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.13e-01 83.3% 67.7%
3rgfA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 48.0 4.42e-01 100.0% 71.9%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.96e-01 83.3% 69.2%
4q97A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.73e-01 83.3% 63.9%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.89e-01 81.9% 70.0%
1hxmB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.82e-01 84.7% 65.7%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.54 36.0 3.36e-01 90.3% 53.1%
3gwzA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 47.0 3.28e-01 100.0% 36.8%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 38.0 3.21e-01 76.4% 72.2%
4pioA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 46.0 3.46e-01 100.0% 38.7%
2cg9X01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.75e-01 84.7% 75.0%
4oi3A00 3.30.70.3090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer 0.53 39.0 3.83e-01 87.5% 74.1%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 36.0 3.23e-01 75.0% 72.4%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 44.0 3.17e-01 100.0% 61.1%
4exkA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.51e-01 81.9% 64.4%
3ostA00 3.30.310.220 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain 0.52 37.0 3.20e-01 100.0% 46.2%
3v67A01 3.30.450.210 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain 0.52 41.0 3.60e-01 93.1% 98.3%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 45.0 3.29e-01 100.0% 43.3%
3k4zA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.33e-01 94.4% 85.2%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.76e-01 83.3% 82.5%
3ndiA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.27e-01 100.0% 42.6%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.87e-01 95.8% 86.3%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 42.0 3.03e-01 100.0% 60.1%
7mjrA04 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.50 39.0 3.66e-01 87.5% 72.8%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 36.0 3.02e-01 100.0% 42.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003311 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.84 77.0 6.61e-01 100.0% 99.1%
5038876 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.83 75.0 6.95e-01 98.6% 100.0%
4032883 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.83 76.0 6.61e-01 100.0% 95.2%
4669352 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 76.0 6.44e-01 100.0% 86.4%
2642578 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.81 75.0 6.38e-01 100.0% 92.7%
3058418 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.80 73.0 6.48e-01 100.0% 82.4%
169594 1.1.13.14 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 0.80 74.0 6.21e-01 100.0% 93.0%
3949274 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 73.0 6.17e-01 100.0% 89.6%
3943285 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 73.0 6.29e-01 100.0% 98.2%
3975275 1.1.13.15 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.77 71.0 6.38e-01 100.0% 76.8%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.76 66.0 5.75e-01 93.1% 100.0%
4933363 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.76 57.0 5.70e-01 88.9% 78.4%
3674829 1.1.13.61 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gar1 0.75 63.0 6.36e-01 98.6% 94.3%
5017568 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.74 57.0 5.55e-01 84.7% 73.8%
2060704 1.1.5.13 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 0.74 60.0 4.05e-01 100.0% 24.5%
4954563 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 65.0 6.14e-01 95.8% 98.8%
3963092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.74 67.0 6.06e-01 100.0% 74.7%
4031786 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.73 63.0 5.96e-01 95.8% 100.0%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.73 64.0 5.91e-01 98.6% 95.7%
185291 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.72 63.0 6.15e-01 97.2% 100.0%
3513184 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 64.0 4.48e-01 100.0% 37.3%
3232791 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.71 56.0 4.63e-01 90.3% 47.7%
5018347 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 60.0 4.70e-01 100.0% 44.5%
119197 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.70 61.0 5.37e-01 100.0% 90.8%
3596757 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 58.0 5.14e-01 93.1% 62.9%
3714390 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.69 58.0 4.82e-01 93.1% 52.8%
3428387 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.68 61.0 4.54e-01 100.0% 45.6%
3945543 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 56.0 5.34e-01 91.7% 91.8%
5022644 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 52.0 4.78e-01 86.1% 71.6%
3265288 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 51.0 4.51e-01 86.1% 57.1%
5042402 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.65 49.0 5.31e-01 80.6% 96.7%
3416144 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 52.0 3.81e-01 100.0% 31.4%
3625604 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.62 47.0 4.20e-01 81.9% 64.8%
5069785 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.62 44.0 3.72e-01 76.4% 72.0%
4385244 11.1.1.117 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EpoR_lig-bind 0.59 42.0 3.86e-01 79.2% 55.0%
3761319 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.58 41.0 4.31e-01 100.0% 83.1%
3619079 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.57 50.0 3.60e-01 100.0% 35.3%
3896294 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.57 43.0 3.99e-01 83.3% 64.2%
3944288 319.3.1.1 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.56 46.0 4.03e-01 93.1% 66.1%
1312444 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.56 46.0 4.41e-01 93.1% 89.5%
3948358 11.1.1.791 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8393 0.56 44.0 4.04e-01 88.9% 64.0%
3981007 319.3.1.0 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.55 45.0 4.06e-01 93.1% 72.4%
5028386 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 40.0 2.98e-01 76.4% 64.9%
4054495 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.55 41.0 3.73e-01 81.9% 66.0%
4144850 11.1.1.1257 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29761 0.55 42.0 3.85e-01 86.1% 62.0%
3228954 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.51e-01 81.9% 76.7%
3467248 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 40.0 3.97e-01 87.5% 75.9%
5049530 319.1.1.23 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.54 42.0 3.91e-01 84.7% 87.8%
3547494 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 40.0 3.50e-01 84.7% 65.8%
3445473 11.1.1.855 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 0.53 43.0 3.03e-01 97.2% 65.5%
5056494 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.52 44.0 3.77e-01 100.0% 57.5%
3629390 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 40.0 3.52e-01 84.7% 72.5%
3621396 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.35e-01 80.6% 79.1%
3412365 10.21.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.51 36.0 2.99e-01 75.0% 66.7%
3319754 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.51 43.0 3.44e-01 100.0% 70.6%
3895206 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.50 38.0 3.51e-01 84.7% 65.0%