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SRR1747065_scaffold_28_prodigal-single.1__X__X__00048
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00048
Identity
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-97
Domain cluster:
rep: MK448910.1__QBX26615.1__Javan336_0025__00025__D2-61
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nutA03 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.56 | 40.0 | 2.85e-01 | 76.3% | 93.7% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.08e-01 | 90.8% | 88.2% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.51 | 35.0 | 3.20e-01 | 100.0% | 53.9% |
| 1zunA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 40.0 | 3.07e-01 | 90.8% | 88.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4507405 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.67 | 37.0 | 4.60e-01 | 100.0% | 91.1% |
| 4161260 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.67 | 37.0 | 4.57e-01 | 100.0% | 91.1% |
| 3247265 | 2.1.1.105 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB | 0.64 | 29.0 | 2.31e-01 | 100.0% | 21.3% |
| 3197091 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.58 | 49.0 | 4.16e-01 | 92.1% | 100.0% |
| 5040283 | 2006.1.1.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD | 0.58 | 46.0 | 3.30e-01 | 88.2% | 92.1% |
| 3246875 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.56 | 37.0 | 3.65e-01 | 88.2% | 63.7% |
| 3571066 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.56 | 36.0 | 3.77e-01 | 88.2% | 72.9% |
| 3212691 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.55 | 35.0 | 3.73e-01 | 85.5% | 76.9% |
| 3744458 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 39.0 | 3.58e-01 | 76.3% | 86.0% |
| 2418726 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.51 | 41.0 | 3.34e-01 | 92.1% | 75.0% |
| 3428624 | 2006.1.6.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Sec23_trunk | 0.51 | 41.0 | 2.93e-01 | 92.1% | 84.8% |
| 4945207 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.50 | 35.0 | 2.88e-01 | 73.7% | 87.7% |