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SRR1747065_scaffold_28_prodigal-single.1__X__X__00062
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00062
Identity
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-99
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ejsA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 36.0 | 4.11e-01 | 75.0% | 70.7% |
| 2w45A01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.60 | 52.0 | 4.60e-01 | 96.2% | 78.4% |
| 4nxiA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 45.0 | 3.48e-01 | 83.7% | 51.8% |
| 2lxeA01 | 1.10.8.850 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Histone-lysine N methyltransferase , C-terminal domain-like | 0.59 | 42.0 | 4.46e-01 | 85.0% | 87.0% |
| 3f6tA02 | 1.10.20.110 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.58 | 42.0 | 3.42e-01 | 76.2% | 64.6% |
| 4gw3A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 42.0 | 2.96e-01 | 83.7% | 97.9% |
| 1zp2A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 42.0 | 3.77e-01 | 83.7% | 84.3% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.54 | 42.0 | 4.39e-01 | 83.7% | 100.0% |
| 4hdrA01 | 1.10.1610.10 | Mainly Alpha › Orthogonal Bundle › 5,6-Dimethylbenzimidazole Phosphoribosyltransferase; Chain: A; domain 1 › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), small domain | 0.53 | 31.0 | 3.40e-01 | 82.5% | 70.3% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 36.0 | 2.96e-01 | 70.0% | 70.6% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.51 | 31.0 | 3.16e-01 | 87.5% | 62.3% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.50 | 37.0 | 3.55e-01 | 86.3% | 67.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3716814 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.69 | 41.0 | 5.07e-01 | 83.7% | 96.0% |
| 3430842 | 103.1.1.39 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF1421 | 0.66 | 44.0 | 4.96e-01 | 77.5% | 100.0% |
| 4627351 | 5051.1.1.28 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › PHO4 | 0.65 | 49.0 | 3.17e-01 | 82.5% | 84.3% |
| 4115978 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.64 | 44.0 | 4.77e-01 | 71.2% | 93.8% |
| 3191367 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 52.0 | 5.09e-01 | 97.5% | 91.1% |
| 4926851 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 41.0 | 4.49e-01 | 80.0% | 95.0% |
| 3787849 | 103.1.1.57 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › GDH2_N | 0.60 | 47.0 | 4.48e-01 | 86.3% | 97.9% |
| 3474514 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 47.0 | 4.39e-01 | 92.5% | 67.6% |
| 3397299 | 148.1.3.210 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_TANC1 | 0.58 | 45.0 | 4.40e-01 | 88.7% | 80.0% |
| 4516639 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.57 | 42.0 | 4.64e-01 | 82.5% | 100.0% |
| 4526829 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.55 | 41.0 | 4.26e-01 | 80.0% | 85.3% |
| 1117594 | 103.10.1.1 ↗ | alpha arrays › RuvA-C › Histone-lysine N-methyltransferase SUVR4 N-termial domain › Histone-lysine N-methyltransferase SUVR4 N-termial domain › WIYLD | 0.53 | 42.0 | 3.85e-01 | 97.5% | 64.2% |
| 4181779 | 4021.1.1.1 ↗ | alpha arrays › alpha-helical domain in 2-methylcitrate dehydratase PrpD › alpha-helical domain in 2-methylcitrate dehydratase PrpD › alpha-helical domain in 2-methylcitrate dehydratase PrpD › SDH_alpha | 0.53 | 43.0 | 3.12e-01 | 91.3% | 40.4% |
| 5032560 | 141.1.1.1 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt | 0.53 | 46.0 | 3.08e-01 | 98.8% | 89.5% |
| 4424897 | 103.15.1.3 ↗ | alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23, MRP-S25 | 0.52 | 36.0 | 3.21e-01 | 81.2% | 47.9% |
| 1276702 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 40.0 | 3.86e-01 | 90.0% | 100.0% |