←Back to structures

SRR1747065_scaffold_28_prodigal-single.1__X__X__00079

Bact-Vir

SRR1747065_scaffold_28_prodigal-single.1__X__X__00079

Identity

Kingdom:
phage

Quality

77.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.79 56.0 4.18e-01 100.0% 31.2%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 55.0 4.27e-01 96.6% 35.8%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.70 47.0 4.63e-01 91.5% 66.1%
1vq8U00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.68 45.0 4.67e-01 89.8% 75.5%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.68 51.0 5.30e-01 100.0% 85.5%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 47.0 3.55e-01 78.0% 40.6%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 32.0 3.22e-01 72.9% 45.2%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 45.0 3.29e-01 76.3% 36.5%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 35.0 3.28e-01 86.4% 47.2%
1b9wA01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.57 35.0 3.65e-01 86.4% 68.6%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 30.0 3.15e-01 76.3% 55.4%
1nubA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 35.0 3.26e-01 89.8% 47.6%
3es1A01 2.20.70.150 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 34.0 3.83e-01 81.4% 100.0%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.52 37.0 2.56e-01 81.4% 81.8%
1f0xA03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 37.0 2.77e-01 78.0% 73.0%
2py5A05 4.10.80.20 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 0.51 28.0 3.35e-01 71.2% 83.3%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 32.0 2.85e-01 91.5% 38.7%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.51 27.0 3.15e-01 74.6% 67.6%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 43.0 2.83e-01 100.0% 33.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
91487 389.1.1.15 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_MSP1_1 0.64 37.0 4.10e-01 78.0% 73.3%
4940846 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 42.0 4.29e-01 91.5% 71.2%
4992185 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.60 36.0 3.06e-01 91.5% 34.0%
3218324 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.58 34.0 3.87e-01 76.3% 82.5%
4293469 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.58 48.0 4.70e-01 91.5% 93.8%
3249214 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 32.0 2.59e-01 81.4% 25.0%
3852406 389.1.1.16 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 0.56 33.0 3.62e-01 79.7% 73.3%
4206629 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.55 31.0 3.47e-01 78.0% 71.1%
3243108 389.3.1.0 ↗ few secondary structure elements › EGF-like › LDL receptor-like module › LDL receptor-like module 0.55 40.0 4.10e-01 100.0% 87.3%
3392170 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.54 32.0 3.65e-01 79.7% 85.0%
3581887 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.54 32.0 3.73e-01 71.2% 85.0%
3661533 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.53 45.0 4.27e-01 96.6% 81.4%
3510551 379.1.1.30 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › FOLN 0.53 36.0 3.15e-01 88.1% 47.7%
3598132 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.52 40.0 2.96e-01 84.7% 89.7%
3936462 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.51 29.0 3.27e-01 71.2% 77.5%
5003581 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.51 40.0 2.42e-01 86.4% 15.1%
3514399 389.1.1.115 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_4 0.50 29.0 3.14e-01 71.2% 68.9%