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SRR1747065_scaffold_28_prodigal-single.1__X__X__00083
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00083
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-126
Domain cluster:
rep: IMGVR_UViG_3300007985_000016-3300007985-Ga0100381_100023268__D6-113
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13638.13 best | PIN_4 | 37.5 | 4.00e-09 | 99.2% | 93.9% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ix7A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.77 | 67.0 | 6.60e-01 | 100.0% | 87.8% |
| 5ywwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.73 | 63.0 | 6.62e-01 | 100.0% | 100.0% |
| 5k8jB00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.71 | 65.0 | 6.53e-01 | 100.0% | 100.0% |
| 2g1uA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 48.0 | 4.64e-01 | 100.0% | 70.1% |
| 3vpxB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 43.0 | 3.64e-01 | 100.0% | 42.2% |
| 1lssA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 46.0 | 4.58e-01 | 100.0% | 72.0% |
| 3l4bC01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 46.0 | 4.78e-01 | 100.0% | 82.1% |
| 7bvaA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 44.0 | 4.96e-01 | 100.0% | 98.9% |
| 2dstA00 | 3.40.50.12270 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 40.0 | 4.11e-01 | 100.0% | 68.0% |
| 4eyeA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 44.0 | 4.07e-01 | 100.0% | 59.0% |
| 4gvlA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 44.0 | 4.33e-01 | 100.0% | 69.1% |
| 3llvA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 44.0 | 4.39e-01 | 100.0% | 72.0% |
| 5bxyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 44.0 | 4.17e-01 | 100.0% | 62.3% |
| 3qwbA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 44.0 | 4.20e-01 | 100.0% | 65.5% |
| 4krgA02 | 3.40.50.12180 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 46.0 | 3.93e-01 | 100.0% | 52.7% |
| 3vtfA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 40.0 | 3.41e-01 | 100.0% | 44.2% |
| 1yb5A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 41.0 | 3.76e-01 | 100.0% | 56.5% |
| 4hh4C01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 44.0 | 3.79e-01 | 100.0% | 53.1% |
| 5hj9A00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.55 | 47.0 | 3.63e-01 | 97.6% | 65.9% |
| 1tyyA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 49.0 | 3.73e-01 | 100.0% | 58.9% |
| 6xehA01 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 39.0 | 4.17e-01 | 100.0% | 84.7% |
| 3d3kA00 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.54 | 46.0 | 3.80e-01 | 100.0% | 50.6% |
| 1jztA00 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.54 | 49.0 | 3.93e-01 | 100.0% | 56.4% |
| 4j4hA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 41.0 | 4.19e-01 | 100.0% | 82.3% |
| 2cvzA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 4.12e-01 | 100.0% | 71.8% |
| 4dz4A00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.53 | 46.0 | 3.52e-01 | 97.6% | 58.5% |
| 2mswA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 39.0 | 3.93e-01 | 100.0% | 76.0% |
| 3gemD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 48.0 | 4.02e-01 | 100.0% | 58.9% |
| 3phhA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 4.30e-01 | 100.0% | 85.4% |
| 3e9nA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 47.0 | 4.10e-01 | 100.0% | 78.3% |
| 2d5cA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 4.14e-01 | 100.0% | 81.6% |
| 4c4oA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 4.24e-01 | 100.0% | 86.9% |
| 4dyvA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 46.0 | 3.84e-01 | 100.0% | 62.0% |
| 1a3wA01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.51 | 39.0 | 3.66e-01 | 98.4% | 65.8% |
| 5idqB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 45.0 | 3.78e-01 | 100.0% | 78.7% |
| 3dzvA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 43.0 | 3.46e-01 | 96.8% | 89.0% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3714472 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.87 | 83.0 | 7.64e-01 | 100.0% | 88.4% |
| 3407500 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.85 | 82.0 | 7.59e-01 | 100.0% | 89.3% |
| 3872969 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.85 | 81.0 | 7.34e-01 | 100.0% | 86.3% |
| 3955347 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.84 | 80.0 | 7.66e-01 | 100.0% | 98.6% |
| 3239615 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.84 | 80.0 | 7.34e-01 | 100.0% | 91.0% |
| 3716376 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.84 | 78.0 | 6.83e-01 | 100.0% | 81.7% |
| 3610521 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.81 | 76.0 | 7.02e-01 | 100.0% | 94.2% |
| 5044238 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.80 | 71.0 | 7.23e-01 | 100.0% | 96.7% |
| 4933108 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.80 | 75.0 | 6.86e-01 | 100.0% | 90.6% |
| 5036873 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.80 | 71.0 | 7.13e-01 | 100.0% | 93.6% |
| 4984503 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.80 | 74.0 | 7.00e-01 | 100.0% | 98.0% |
| 4638793 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.79 | 71.0 | 7.11e-01 | 100.0% | 94.4% |
| 5030128 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.79 | 71.0 | 7.24e-01 | 100.0% | 98.3% |
| 4932381 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.79 | 73.0 | 7.38e-01 | 100.0% | 96.8% |
| 4987795 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.79 | 71.0 | 7.17e-01 | 100.0% | 95.2% |
| 4994951 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.79 | 68.0 | 6.73e-01 | 100.0% | 86.9% |
| 3284485 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.78 | 74.0 | 7.07e-01 | 100.0% | 97.9% |
| 3600640 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.78 | 73.0 | 4.48e-01 | 100.0% | 24.6% |
| 5048305 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.78 | 69.0 | 6.99e-01 | 100.0% | 95.2% |
| 3655948 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.77 | 73.0 | 6.37e-01 | 100.0% | 78.3% |
| 5036539 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.77 | 69.0 | 6.99e-01 | 100.0% | 96.0% |
| 3590028 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 68.0 | 6.67e-01 | 100.0% | 87.4% |
| 4996361 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.77 | 68.0 | 6.77e-01 | 100.0% | 91.5% |
| 5001598 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.77 | 72.0 | 6.94e-01 | 100.0% | 95.7% |
| 4970668 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.76 | 68.0 | 6.73e-01 | 100.0% | 91.5% |
| 5049564 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.76 | 68.0 | 6.03e-01 | 100.0% | 69.4% |
| 5030554 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.75 | 70.0 | 6.61e-01 | 100.0% | 84.5% |
| 3006087 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 71.0 | 6.75e-01 | 100.0% | 97.9% |
| 4968503 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 69.0 | 6.51e-01 | 100.0% | 94.7% |
| 5000463 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.74 | 70.0 | 6.72e-01 | 100.0% | 91.4% |
| 5076970 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.74 | 66.0 | 6.69e-01 | 100.0% | 95.2% |
| 3953611 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 69.0 | 6.62e-01 | 100.0% | 99.3% |
| 4977264 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 68.0 | 6.48e-01 | 100.0% | 95.1% |
| 5053452 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 68.0 | 6.64e-01 | 99.2% | 98.5% |
| 5077792 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 68.0 | 6.23e-01 | 100.0% | 94.3% |
| 5019933 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.73 | 66.0 | 5.97e-01 | 100.0% | 73.3% |
| 4994080 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 68.0 | 6.57e-01 | 100.0% | 95.7% |
| 4527737 | 7524.1.1.0 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like | 0.73 | 46.0 | 3.70e-01 | 76.0% | 35.6% |
| 3949089 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 68.0 | 6.54e-01 | 100.0% | 95.7% |
| 4954382 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.73 | 67.0 | 5.99e-01 | 100.0% | 72.9% |
| 4984740 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.72 | 67.0 | 6.47e-01 | 100.0% | 97.1% |
| 5040007 | 2006.1.4.49 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_2 | 0.72 | 67.0 | 6.45e-01 | 100.0% | 93.6% |
| 5078897 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.72 | 67.0 | 6.23e-01 | 100.0% | 96.1% |
| 5065008 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.72 | 65.0 | 6.32e-01 | 98.4% | 100.0% |
| 5006643 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.72 | 66.0 | 6.26e-01 | 100.0% | 95.9% |
| 5031999 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.71 | 66.0 | 6.28e-01 | 100.0% | 95.9% |
| 4592909 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.71 | 66.0 | 6.45e-01 | 100.0% | 96.3% |
| 4966992 | 2006.1.4.49 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_2 | 0.71 | 66.0 | 6.41e-01 | 100.0% | 94.1% |
| 3576043 | 2006.1.4.30 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_TASOR | 0.71 | 66.0 | 6.09e-01 | 100.0% | 91.0% |
| 4971956 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.71 | 65.0 | 6.04e-01 | 100.0% | 96.8% |
| 5076283 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.71 | 65.0 | 6.35e-01 | 99.2% | 97.0% |
| 3954988 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.70 | 62.0 | 6.38e-01 | 99.2% | 100.0% |
| 5059447 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.70 | 65.0 | 6.27e-01 | 100.0% | 95.0% |
| 4989833 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.70 | 56.0 | 5.64e-01 | 84.0% | 96.0% |
| 4975798 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.70 | 62.0 | 5.62e-01 | 100.0% | 72.1% |
| 5031993 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.70 | 64.0 | 6.18e-01 | 100.0% | 92.1% |
| 3640749 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.69 | 62.0 | 5.71e-01 | 100.0% | 92.1% |
| 5016522 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.69 | 63.0 | 5.96e-01 | 99.2% | 86.0% |
| 5079030 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.67 | 62.0 | 6.00e-01 | 100.0% | 99.3% |
| 4940357 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.67 | 61.0 | 5.80e-01 | 100.0% | 89.7% |
| 4355891 | 2003.1.8.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › MurD-like_N | 0.62 | 41.0 | 4.49e-01 | 100.0% | 83.0% |
| 4957885 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.62 | 45.0 | 4.73e-01 | 100.0% | 82.6% |
| 4966994 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.61 | 45.0 | 4.51e-01 | 100.0% | 73.8% |
| 5049901 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.60 | 44.0 | 3.76e-01 | 100.0% | 46.8% |
| 4014993 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.58 | 43.0 | 3.83e-01 | 100.0% | 53.5% |
| 4958619 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.54 | 39.0 | 4.10e-01 | 100.0% | 81.7% |
| 5065816 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.53 | 40.0 | 4.15e-01 | 100.0% | 83.5% |
| 3839524 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.51 | 42.0 | 3.90e-01 | 100.0% | 70.3% |
| 4934317 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.51 | 42.0 | 3.95e-01 | 100.0% | 72.3% |
| 3723724 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.50 | 43.0 | 3.25e-01 | 97.6% | 95.5% |
D2
medium
residues 133-194
Domain cluster:
rep: aot2015-SM02_SRR1761699_Peru_trim_clean_trim_clean_scaffold_10_curated_closed_complete_start-adj_prodigal-single.1__X__X__00327__D144-210
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v47A01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.68 | 54.0 | 4.30e-01 | 88.7% | 95.5% |
| 3m4xA03 | 2.30.130.60 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › | 0.65 | 49.0 | 5.08e-01 | 85.5% | 91.2% |
| 1r3fA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.64 | 51.0 | 5.10e-01 | 90.3% | 90.8% |
| 2frxA02 | 3.10.450.720 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 51.0 | 3.79e-01 | 88.7% | 72.6% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.59 | 48.0 | 3.83e-01 | 98.4% | 43.3% |
| 1utbB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 40.0 | 3.20e-01 | 72.6% | 39.8% |
| 2odkA00 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.58 | 41.0 | 4.44e-01 | 87.1% | 92.0% |
| 5ywwA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 47.0 | 3.40e-01 | 91.9% | 80.7% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 47.0 | 3.79e-01 | 98.4% | 47.1% |
| 5wt7A00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.56 | 40.0 | 3.16e-01 | 77.4% | 56.4% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 39.0 | 4.11e-01 | 85.5% | 89.3% |
| 1qyaB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 44.0 | 3.53e-01 | 100.0% | 60.4% |
| 6hlyA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 44.0 | 3.10e-01 | 93.5% | 58.7% |
| 4hw8A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 36.0 | 2.67e-01 | 72.6% | 31.1% |
| 1w94A00 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.52 | 42.0 | 3.22e-01 | 91.9% | 67.1% |
| 2f68X01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 35.0 | 2.79e-01 | 71.0% | 55.1% |
| 2vifA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 40.0 | 3.25e-01 | 87.1% | 71.4% |
| 3hutA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 44.0 | 3.37e-01 | 96.8% | 58.0% |
| 7tchB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 2.83e-01 | 90.3% | 86.0% |
| 2qwvA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.52 | 41.0 | 3.03e-01 | 93.5% | 53.7% |
| 3lkbA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 44.0 | 3.32e-01 | 100.0% | 51.5% |
| 1xa6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 41.0 | 3.58e-01 | 93.5% | 75.0% |
| 2jgpA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 41.0 | 3.04e-01 | 95.2% | 34.9% |
| 3ot2A00 | 3.90.1570.10 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A | 0.51 | 41.0 | 3.10e-01 | 96.8% | 55.9% |
| 1rpyB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 42.0 | 3.80e-01 | 93.5% | 72.1% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930189 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.78 | 64.0 | 6.54e-01 | 90.3% | 91.7% |
| 4396079 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.73 | 58.0 | 5.97e-01 | 87.1% | 95.0% |
| 4315796 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.72 | 57.0 | 5.78e-01 | 90.3% | 88.3% |
| 3591043 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.72 | 56.0 | 5.59e-01 | 87.1% | 93.8% |
| 4175496 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.70 | 54.0 | 5.59e-01 | 90.3% | 91.4% |
| 4275604 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.70 | 52.0 | 5.34e-01 | 83.9% | 85.0% |
| 4667369 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.69 | 54.0 | 4.89e-01 | 85.5% | 96.5% |
| 4406944 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.69 | 54.0 | 5.51e-01 | 88.7% | 90.0% |
| 3958547 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.69 | 59.0 | 5.86e-01 | 95.2% | 98.5% |
| 4328282 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.69 | 52.0 | 5.41e-01 | 87.1% | 92.7% |
| 4659422 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.68 | 53.0 | 5.40e-01 | 87.1% | 96.7% |
| 4262578 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.68 | 56.0 | 5.53e-01 | 90.3% | 93.8% |
| 4576540 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.68 | 54.0 | 5.53e-01 | 88.7% | 91.7% |
| 4961856 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.68 | 54.0 | 4.20e-01 | 88.7% | 54.3% |
| 4317061 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.67 | 53.0 | 5.29e-01 | 88.7% | 98.5% |
| 4558351 | 1.1.9.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltranf_PUA | 0.67 | 52.0 | 4.97e-01 | 85.5% | 73.0% |
| 3238508 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.67 | 51.0 | 4.93e-01 | 83.9% | 88.6% |
| 4185287 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.67 | 52.0 | 5.28e-01 | 85.5% | 95.0% |
| 4328178 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.67 | 51.0 | 5.23e-01 | 85.5% | 95.0% |
| 4178357 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.66 | 52.0 | 5.20e-01 | 88.7% | 93.8% |
| 4076716 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.66 | 51.0 | 5.01e-01 | 88.7% | 91.4% |
| 4408612 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.65 | 50.0 | 5.11e-01 | 85.5% | 90.0% |
| 3508132 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.65 | 51.0 | 5.05e-01 | 87.1% | 89.2% |
| 4258656 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.65 | 53.0 | 5.03e-01 | 90.3% | 94.6% |
| 4933486 | 1.1.9.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltranf_PUA | 0.65 | 49.0 | 4.98e-01 | 82.3% | 88.3% |
| 4073701 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.65 | 51.0 | 4.97e-01 | 88.7% | 94.1% |
| 4052980 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.64 | 51.0 | 5.15e-01 | 90.3% | 91.7% |
| 4639226 | 1.1.9.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltranf_PUA | 0.64 | 50.0 | 4.81e-01 | 87.1% | 82.2% |
| 1225053 | 1.1.9.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltranf_PUA | 0.64 | 48.0 | 4.70e-01 | 85.5% | 73.2% |
| 4503432 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.64 | 49.0 | 4.79e-01 | 87.1% | 97.1% |
| 4398407 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.63 | 49.0 | 4.92e-01 | 90.3% | 89.2% |
| 3987681 | 1.1.9.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltranf_PUA | 0.63 | 48.0 | 4.91e-01 | 85.5% | 90.0% |
| 4174313 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.63 | 49.0 | 5.03e-01 | 88.7% | 95.0% |
| 5028251 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.62 | 53.0 | 4.33e-01 | 91.9% | 70.0% |
| 4504459 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 51.0 | 4.79e-01 | 90.3% | 93.3% |
| 4219656 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.61 | 47.0 | 4.79e-01 | 88.7% | 93.3% |
| 4139080 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.60 | 45.0 | 4.61e-01 | 85.5% | 93.3% |
| 5040501 | 1.1.9.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltranf_PUA | 0.60 | 45.0 | 4.56e-01 | 85.5% | 90.0% |
| 4631930 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.59 | 49.0 | 3.97e-01 | 100.0% | 46.2% |
| 3947985 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.59 | 45.0 | 4.39e-01 | 87.1% | 74.3% |
| 169137 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.59 | 48.0 | 3.86e-01 | 98.4% | 44.3% |
| 4062771 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 46.0 | 4.71e-01 | 88.7% | 95.0% |
| 4362495 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 46.0 | 4.41e-01 | 90.3% | 96.0% |
| 3665569 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 50.0 | 3.76e-01 | 96.8% | 54.2% |
| 4946135 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 45.0 | 4.31e-01 | 88.7% | 92.0% |
| 4954519 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.56 | 45.0 | 3.38e-01 | 88.7% | 68.4% |
| 5072584 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.56 | 46.0 | 2.99e-01 | 93.5% | 22.0% |
| 3438472 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.55 | 49.0 | 3.33e-01 | 100.0% | 66.7% |
| 3964049 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.55 | 40.0 | 3.23e-01 | 80.6% | 90.8% |
| None | — | 0.54 | 43.0 | 2.71e-01 | 88.7% | 60.6% | |
| 5007044 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.54 | 46.0 | 3.45e-01 | 93.5% | 64.7% |
| 3506275 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.54 | 44.0 | 3.41e-01 | 93.5% | 62.1% |
| 4969998 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 41.0 | 4.04e-01 | 85.5% | 95.7% |
| 4928779 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 45.0 | 3.44e-01 | 96.8% | 81.3% |
| 3428868 | 2002.1.1.19 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 | 0.53 | 43.0 | 3.06e-01 | 100.0% | 58.8% |
| 1891699 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 35.0 | 3.36e-01 | 71.0% | 83.3% |
| 4631652 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.52 | 42.0 | 2.91e-01 | 93.5% | 62.7% |
| 3604182 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.51 | 44.0 | 3.29e-01 | 98.4% | 55.6% |
| 3510537 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.51 | 43.0 | 3.14e-01 | 93.5% | 79.9% |
| 3628065 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 39.0 | 3.00e-01 | 87.1% | 38.1% |
| 3260077 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.51 | 42.0 | 2.69e-01 | 100.0% | 67.9% |
D3
medium
residues 216-264_281-408
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02562.23 best | PhoH | 73.2 | 2.90e-20 | 65.0% | 47.3% |