←Back to structures
SRR1747065_scaffold_28_prodigal-single.1__X__X__00103
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00103
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-53
D2
high
residues 58-100
Domain cluster:
rep: MN882553.2__QHJ73795.1__X__00058__D39-80
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jj2Y00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.76 | 49.0 | 4.16e-01 | 72.1% | 39.7% |
| 1vwxp00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.74 | 48.0 | 3.79e-01 | 72.1% | 31.9% |
| 2y8nB01 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.66 | 47.0 | 4.81e-01 | 97.7% | 81.0% |
| 1pg5B02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.66 | 47.0 | 4.26e-01 | 76.7% | 56.1% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 43.0 | 4.22e-01 | 72.1% | 70.2% |
| 1vziA01 | 2.20.28.100 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain | 0.61 | 41.0 | 4.25e-01 | 81.4% | 76.3% |
| 3go5A01 | 2.40.50.330 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 45.0 | 3.95e-01 | 88.4% | 57.7% |
| 3cihA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 48.0 | 3.58e-01 | 100.0% | 34.1% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 40.0 | 3.76e-01 | 79.1% | 58.2% |
| 2atcB02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.58 | 41.0 | 3.93e-01 | 76.7% | 61.5% |
| 2id0A04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 51.0 | 4.02e-01 | 100.0% | 93.1% |
| 1m2gA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.57 | 46.0 | 3.72e-01 | 97.7% | 62.4% |
| 1gmeA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 45.0 | 3.25e-01 | 100.0% | 44.7% |
| 3i5tB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 43.0 | 3.05e-01 | 95.3% | 45.7% |
| 4kx7A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 45.0 | 3.80e-01 | 100.0% | 96.4% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.49e-01 | 100.0% | 53.3% |
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 42.0 | 2.80e-01 | 86.0% | 75.4% |
| 6g4bA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 40.0 | 2.78e-01 | 86.0% | 72.5% |
| 3dodB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 40.0 | 2.76e-01 | 86.0% | 73.2% |
| 3ubhA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.53 | 41.0 | 3.40e-01 | 100.0% | 87.8% |
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 3.72e-01 | 100.0% | 67.6% |
| 3d3rA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.24e-01 | 83.7% | 53.0% |
| 1vefA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 40.0 | 2.99e-01 | 97.7% | 46.9% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 38.0 | 2.78e-01 | 95.3% | 32.4% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.51 | 36.0 | 3.15e-01 | 90.7% | 60.9% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.51 | 35.0 | 3.16e-01 | 83.7% | 45.8% |
| 3hrpA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 37.0 | 2.37e-01 | 90.7% | 22.0% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.32e-01 | 100.0% | 55.0% |
| 3d31A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 41.0 | 4.06e-01 | 100.0% | 93.5% |
| 3ubgB01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.50 | 37.0 | 3.19e-01 | 100.0% | 92.7% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962900 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.79 | 52.0 | 4.04e-01 | 72.1% | 32.6% |
| 5028391 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.76 | 50.0 | 3.89e-01 | 72.1% | 31.2% |
| 4943268 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 49.0 | 3.95e-01 | 72.1% | 34.1% |
| 5042912 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.75 | 49.0 | 4.02e-01 | 72.1% | 36.3% |
| 2642976 | 375.1.1.206 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae, Zn_ribbon_IS1595 | 0.75 | 49.0 | 3.94e-01 | 72.1% | 34.5% |
| 3314730 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.72 | 50.0 | 4.47e-01 | 72.1% | 51.7% |
| 5038213 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.69 | 47.0 | 4.50e-01 | 74.4% | 60.0% |
| 8046 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.66 | 47.0 | 4.29e-01 | 76.7% | 57.1% |
| 3499778 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 52.0 | 4.82e-01 | 97.7% | 72.2% |
| 3694248 | 4224.1.1.1 ↗ | few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger › zf-CHY | 0.64 | 52.0 | 4.48e-01 | 95.3% | 90.4% |
| 3324892 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.63 | 52.0 | 3.99e-01 | 93.0% | 41.8% |
| 3312039 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 52.0 | 4.89e-01 | 100.0% | 77.4% |
| 3931217 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.62 | 53.0 | 4.63e-01 | 97.7% | 66.2% |
| 3925231 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 52.0 | 4.72e-01 | 97.7% | 76.7% |
| 3436005 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 41.0 | 3.67e-01 | 72.1% | 47.7% |
| 5074404 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.61 | 45.0 | 4.13e-01 | 76.7% | 60.0% |
| 4954496 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.60 | 48.0 | 4.05e-01 | 93.0% | 87.5% |
| 4946534 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.60 | 42.0 | 2.62e-01 | 79.1% | 12.7% |
| 3880983 | 376.1.4.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 | 0.59 | 45.0 | 3.45e-01 | 86.0% | 37.1% |
| 3689787 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.59 | 45.0 | 3.85e-01 | 95.3% | 83.3% |
| 4978946 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 53.0 | 4.70e-01 | 100.0% | 86.7% |
| 4103373 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.58 | 46.0 | 4.27e-01 | 100.0% | 69.1% |
| 5026901 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 43.0 | 4.09e-01 | 90.7% | 86.7% |
| 3249904 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.58 | 42.0 | 3.57e-01 | 81.4% | 43.8% |
| 4943890 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 46.0 | 3.42e-01 | 100.0% | 59.3% |
| 3603358 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 50.0 | 4.55e-01 | 100.0% | 93.3% |
| 4804322 | 63.1.1.1 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR | 0.57 | 43.0 | 3.16e-01 | 90.7% | 94.7% |
| 3993634 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.57 | 41.0 | 3.98e-01 | 79.1% | 78.0% |
| 3936491 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.57 | 49.0 | 3.81e-01 | 100.0% | 56.0% |
| 3685207 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.54 | 42.0 | 3.12e-01 | 100.0% | 67.4% |
| 5044272 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.53 | 38.0 | 3.70e-01 | 83.7% | 70.0% |
| 3434094 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.52 | 41.0 | 3.42e-01 | 100.0% | 92.6% |
| 3854638 | 4.1.1.131 ↗ | beta barrels › SH3 › SH3 › SH3 › MLVIN_C | 0.51 | 34.0 | 2.75e-01 | 76.7% | 29.0% |
| 4029219 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 44.0 | 2.80e-01 | 100.0% | 32.3% |