←Back to structures
SRR1747065_scaffold_28_prodigal-single.1__X__X__00112
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00112
Identity
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-106
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r6bX05 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 33.0 | 3.45e-01 | 84.0% | 52.5% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.60 | 24.0 | 3.32e-01 | 71.7% | 73.6% |
| 3mzkB03 | 1.20.58.940 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 29.0 | 3.44e-01 | 71.7% | 74.3% |
| 3syjA02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.52 | 45.0 | 2.83e-01 | 99.1% | 54.6% |
| 5domA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.51 | 37.0 | 3.95e-01 | 75.5% | 97.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3576744 | 11.1.1.12 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin | 0.67 | 25.0 | 3.10e-01 | 70.8% | 52.3% |
| 3796324 | 3371.1.1.1 ↗ | few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › RPAP2_Rtr1 | 0.62 | 50.0 | 4.47e-01 | 89.6% | 92.3% |
| 4988497 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.61 | 32.0 | 2.74e-01 | 95.3% | 31.5% |
| 3994572 | 3371.1.1.1 ↗ | few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › RPAP2_Rtr1 | 0.58 | 47.0 | 4.53e-01 | 87.7% | 91.7% |
| 3574458 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.57 | 45.0 | 3.87e-01 | 87.7% | 77.7% |
| 3174353 | 5.1.4.573 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30151 | 0.52 | 38.0 | 2.57e-01 | 77.4% | 34.6% |