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SRR1747065_scaffold_28_prodigal-single.1__X__X__00121
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00121
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-51
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m8cA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 43.0 | 3.29e-01 | 86.3% | 81.0% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.54 | 40.0 | 3.82e-01 | 78.4% | 94.8% |
| 3qf3D00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 38.0 | 2.94e-01 | 82.4% | 43.8% |
| 3bblA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 37.0 | 2.85e-01 | 86.3% | 69.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3387936 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.57 | 41.0 | 3.01e-01 | 80.4% | 67.3% |
| 3382362 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.57 | 40.0 | 2.74e-01 | 76.5% | 82.9% |
| 5013246 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.55 | 44.0 | 3.09e-01 | 98.0% | 67.0% |
| 4451024 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.55 | 39.0 | 2.75e-01 | 78.4% | 92.2% |
| 3186544 | 2003.1.2.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 | 0.54 | 42.0 | 2.48e-01 | 92.2% | 39.5% |
D2
medium
residues 52-107
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 50.0 | 4.29e-01 | 100.0% | 96.0% |
| 2dd8S01 | 3.30.70.1840 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Spike protein, C-terminal core receptor binding subdomain | 0.59 | 52.0 | 3.92e-01 | 100.0% | 48.9% |
| 4itxA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 43.0 | 3.32e-01 | 87.5% | 38.0% |
| 3hoiA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 49.0 | 3.37e-01 | 100.0% | 81.9% |
| 2ywwA01 | 3.30.70.140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain | 0.54 | 43.0 | 3.71e-01 | 98.2% | 54.9% |
| 4ponA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 3.17e-01 | 100.0% | 30.8% |
| 5gi7A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 46.0 | 3.16e-01 | 100.0% | 26.7% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.52 | 43.0 | 3.32e-01 | 100.0% | 40.3% |
| 4lwjA00 | 3.30.1060.10 | Alpha Beta › 2-Layer Sandwich › Peptide Methionine Sulfoxide Reductase; Chain A › Peptide methionine sulphoxide reductase MsrA | 0.52 | 44.0 | 3.06e-01 | 100.0% | 27.3% |
| 3b8mC01 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.52 | 41.0 | 3.19e-01 | 98.2% | 78.1% |
| 3vaxA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 44.0 | 3.79e-01 | 100.0% | 100.0% |
| 4bbyB04 | 3.30.70.3450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.63e-01 | 100.0% | 69.2% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 44.0 | 3.72e-01 | 100.0% | 63.5% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.50 | 42.0 | 3.60e-01 | 100.0% | 74.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3282982 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.65 | 59.0 | 3.80e-01 | 100.0% | 24.3% |
| 4024758 | 304.8.1.99 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26946 | 0.62 | 53.0 | 5.03e-01 | 100.0% | 80.0% |
| 3936261 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.62 | 53.0 | 4.70e-01 | 100.0% | 68.7% |
| 3740762 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.60 | 52.0 | 4.31e-01 | 100.0% | 60.0% |
| 5024288 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.59 | 52.0 | 4.26e-01 | 100.0% | 61.9% |
| 3734912 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.57 | 50.0 | 3.97e-01 | 100.0% | 55.7% |
| 3707062 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 48.0 | 3.04e-01 | 100.0% | 21.3% |
| 4388112 | 304.5.1.18 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › PrmA | 0.55 | 47.0 | 3.92e-01 | 100.0% | 61.9% |
| 4972963 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.55 | 41.0 | 3.32e-01 | 85.7% | 85.8% |
| 5039763 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.55 | 46.0 | 2.98e-01 | 100.0% | 20.4% |
| 3738924 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.54 | 45.0 | 3.92e-01 | 94.6% | 77.8% |
| 3272167 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 41.0 | 2.62e-01 | 85.7% | 19.1% |
| 3232310 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 47.0 | 3.94e-01 | 100.0% | 57.9% |
| 4282465 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.53 | 39.0 | 2.56e-01 | 80.4% | 29.1% |
| 3727497 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.53 | 46.0 | 3.64e-01 | 100.0% | 60.0% |
| 3594543 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 46.0 | 3.78e-01 | 100.0% | 68.6% |
| 3601974 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 3.53e-01 | 100.0% | 47.7% |
| 4028387 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 46.0 | 3.88e-01 | 100.0% | 63.2% |
| 3743454 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 37.0 | 2.62e-01 | 82.1% | 72.3% |
| 4629040 | 327.11.2.24 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_12 | 0.51 | 45.0 | 3.68e-01 | 100.0% | 58.1% |
| 4966643 | 304.5.1.1 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II | 0.51 | 44.0 | 3.65e-01 | 100.0% | 61.0% |
| 3315603 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 41.0 | 2.97e-01 | 100.0% | 37.1% |
| 3179514 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.51 | 44.0 | 3.81e-01 | 100.0% | 70.0% |
| 4030054 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.50 | 44.0 | 3.78e-01 | 100.0% | 70.0% |
| 3928940 | 241.6.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc | 0.50 | 42.0 | 3.09e-01 | 100.0% | 44.8% |
D3
medium
residues 108-205
Domain cluster:
rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072184__D111-206