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SRR1747065_scaffold_28_prodigal-single.1__X__X__00127
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00127
Identity
- Kingdom:
- phage
Quality
65.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-89
Domain cluster:
rep: aot2015-NO19_SRR1761693_USA_trim_clean_trim_clean_scaffold_5_curated_closed_complete_reversed_prodigal-single.1__X__X__00176__D170-225
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.74 | 41.0 | 5.02e-01 | 70.2% | 93.9% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 47.0 | 4.01e-01 | 100.0% | 46.2% |
| 4mi0A00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.65 | 40.0 | 2.73e-01 | 98.2% | 16.8% |
| 5cmlA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.65 | 48.0 | 3.20e-01 | 80.7% | 23.3% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 46.0 | 4.38e-01 | 89.5% | 65.2% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.64 | 46.0 | 3.17e-01 | 75.4% | 64.8% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.64 | 52.0 | 3.84e-01 | 100.0% | 84.5% |
| 3h8zA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 44.0 | 4.76e-01 | 75.4% | 85.4% |
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.62 | 42.0 | 4.50e-01 | 70.2% | 95.8% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 49.0 | 4.14e-01 | 91.2% | 68.3% |
| 5l8sA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 47.0 | 3.07e-01 | 82.5% | 22.2% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 50.0 | 5.09e-01 | 96.5% | 96.4% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 42.0 | 4.01e-01 | 77.2% | 86.3% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 3.94e-01 | 87.7% | 59.7% |
| 6x6aA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 44.0 | 2.87e-01 | 82.5% | 22.8% |
| 4lb0A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.58 | 46.0 | 3.48e-01 | 96.5% | 75.0% |
| 3m4rA01 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.58 | 48.0 | 3.42e-01 | 98.2% | 43.3% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 41.0 | 3.96e-01 | 98.2% | 65.7% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 47.0 | 3.65e-01 | 94.7% | 76.5% |
| 2jxwA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 42.0 | 3.87e-01 | 100.0% | 60.0% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.57 | 41.0 | 3.21e-01 | 78.9% | 37.0% |
| 4eo0A00 | 3.30.110.160 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.57 | 43.0 | 3.52e-01 | 82.5% | 78.3% |
| 1milA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 45.0 | 3.88e-01 | 96.5% | 73.1% |
| 2kumA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 43.0 | 4.31e-01 | 86.0% | 84.2% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.55 | 46.0 | 3.49e-01 | 100.0% | 57.8% |
| 2bbaA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 41.0 | 2.88e-01 | 80.7% | 77.3% |
| 1ae2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 40.0 | 3.57e-01 | 78.9% | 86.0% |
| 3bt7A02 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 36.0 | 2.77e-01 | 96.5% | 26.2% |
| 3e66A01 | 3.30.420.230 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region | 0.54 | 45.0 | 3.37e-01 | 100.0% | 62.1% |
| 3qijB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 36.0 | 3.15e-01 | 77.2% | 44.9% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.53 | 40.0 | 3.45e-01 | 89.5% | 74.1% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.53 | 37.0 | 3.31e-01 | 73.7% | 94.0% |
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.53 | 29.0 | 3.33e-01 | 84.2% | 80.0% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.53 | 37.0 | 2.90e-01 | 77.2% | 56.8% |
| 4za3A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.53 | 46.0 | 3.39e-01 | 100.0% | 35.0% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.52 | 42.0 | 3.64e-01 | 98.2% | 88.2% |
| 4rbnA01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.06e-01 | 100.0% | 36.4% |
| 1h4rA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.29e-01 | 80.7% | 100.0% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.51 | 37.0 | 3.58e-01 | 84.2% | 70.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3811668 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 45.0 | 5.20e-01 | 87.7% | 85.0% |
| 3586676 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.74 | 50.0 | 5.72e-01 | 78.9% | 100.0% |
| 3346241 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.67 | 46.0 | 4.88e-01 | 82.5% | 84.0% |
| 5016027 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 53.0 | 4.59e-01 | 96.5% | 56.7% |
| 3418511 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.64 | 45.0 | 4.76e-01 | 78.9% | 86.0% |
| 3308663 | 601.3.1.11 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PHD_Oberon | 0.64 | 50.0 | 3.73e-01 | 86.0% | 67.6% |
| 3832466 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.63 | 45.0 | 3.59e-01 | 75.4% | 63.5% |
| 3204334 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.63 | 41.0 | 4.32e-01 | 94.7% | 76.0% |
| 3922387 | 260.1.1.1 ↗ | a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin | 0.63 | 43.0 | 2.53e-01 | 73.7% | 11.3% |
| 3811724 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.62 | 44.0 | 4.44e-01 | 75.4% | 75.9% |
| 3907024 | 260.1.1.1 ↗ | a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin | 0.61 | 48.0 | 2.97e-01 | 100.0% | 15.3% |
| 3726946 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.61 | 43.0 | 3.45e-01 | 75.4% | 44.3% |
| 4927858 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 40.0 | 4.07e-01 | 75.4% | 69.1% |
| 3656728 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.61 | 44.0 | 4.41e-01 | 80.7% | 76.3% |
| 3426675 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.61 | 44.0 | 4.36e-01 | 82.5% | 74.6% |
| 4137634 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 49.0 | 4.14e-01 | 94.7% | 53.7% |
| 3828070 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.60 | 44.0 | 4.45e-01 | 82.5% | 81.8% |
| 3801858 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.60 | 42.0 | 4.22e-01 | 75.4% | 81.7% |
| 3509371 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 46.0 | 3.84e-01 | 91.2% | 68.7% |
| 3626927 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.59 | 46.0 | 4.66e-01 | 96.5% | 89.1% |
| 3434453 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.59 | 38.0 | 4.14e-01 | 73.7% | 100.0% |
| 119323 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.58 | 36.0 | 3.67e-01 | 98.2% | 62.1% |
| 3833792 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.58 | 42.0 | 3.61e-01 | 78.9% | 68.4% |
| 4959885 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.57 | 42.0 | 3.84e-01 | 82.5% | 70.6% |
| None | — | 0.57 | 41.0 | 3.19e-01 | 98.2% | 34.4% | |
| 3514954 | 5.1.4.77 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF3748 | 0.57 | 49.0 | 2.93e-01 | 96.5% | 39.5% |
| 3699899 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.57 | 42.0 | 3.41e-01 | 82.5% | 40.0% |
| 3236050 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 44.0 | 3.55e-01 | 84.2% | 49.1% |
| 3722582 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.57 | 40.0 | 3.08e-01 | 75.4% | 66.7% |
| 3689391 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.57 | 40.0 | 3.04e-01 | 75.4% | 65.9% |
| 4948875 | 2004.1.1.100 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 | 0.57 | 49.0 | 3.51e-01 | 100.0% | 43.3% |
| 3608377 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 44.0 | 4.22e-01 | 89.5% | 90.0% |
| 3597599 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.56 | 41.0 | 3.53e-01 | 82.5% | 48.0% |
| 3222570 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.67e-01 | 96.5% | 46.1% |
| 3300738 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.55 | 43.0 | 3.32e-01 | 91.2% | 69.3% |
| 5070745 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 35.0 | 3.88e-01 | 91.2% | 84.4% |
| 3930705 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.54 | 39.0 | 3.34e-01 | 78.9% | 66.0% |
| 3370517 | 109.1.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 | 0.53 | 46.0 | 3.40e-01 | 100.0% | 61.3% |
| 3843072 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.53 | 39.0 | 2.52e-01 | 78.9% | 98.1% |
| 3606500 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.52 | 41.0 | 4.13e-01 | 96.5% | 85.0% |
| 3493294 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 41.0 | 3.05e-01 | 96.5% | 33.8% |
| 4952930 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.51 | 44.0 | 3.85e-01 | 96.5% | 77.6% |
| 3606532 | 2484.6.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR | 0.51 | 39.0 | 3.42e-01 | 91.2% | 54.4% |
| 3802674 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.51 | 43.0 | 2.78e-01 | 100.0% | 44.7% |