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SRR1747065_scaffold_28_prodigal-single.1__X__X__00132
Bact-VirSRR1747065_scaffold_28_prodigal-single.1__X__X__00132
Identity
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-88
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oksA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 35.0 | 2.55e-01 | 72.2% | 28.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4808082 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.63 | 32.0 | 2.84e-01 | 80.6% | 31.1% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.63 | 45.0 | 3.50e-01 | 75.0% | 42.7% |
| 3895743 | 3615.1.1.7 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 | 0.62 | 54.0 | 4.02e-01 | 100.0% | 65.3% |
| 3698887 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.61 | 54.0 | 3.24e-01 | 100.0% | 34.7% |
| 4025997 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 42.0 | 2.94e-01 | 72.2% | 100.0% |
| 3196317 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 44.0 | 3.37e-01 | 77.8% | 50.6% |
| 5051015 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 42.0 | 3.27e-01 | 75.0% | 39.4% |
| 3303026 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.59 | 41.0 | 2.45e-01 | 72.2% | 15.2% |
| 4992898 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.54 | 39.0 | 2.57e-01 | 76.4% | 93.1% |
| 4939039 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.53 | 38.0 | 2.71e-01 | 76.4% | 29.8% |
| 5049690 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 38.0 | 3.00e-01 | 76.4% | 39.3% |
| 2603952 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.50 | 36.0 | 3.58e-01 | 86.1% | 72.7% |
D2
medium
residues 103-166
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jtwA03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.75 | 67.0 | 5.35e-01 | 100.0% | 57.5% |
| 5jtwA02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.74 | 65.0 | 5.59e-01 | 100.0% | 63.0% |
| 3gm8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 51.0 | 4.77e-01 | 93.8% | 61.5% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.70 | 61.0 | 5.24e-01 | 100.0% | 61.9% |
| 3cu7A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.70 | 61.0 | 5.19e-01 | 100.0% | 61.3% |
| 2blfA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 54.0 | 4.59e-01 | 100.0% | 57.0% |
| 3b4nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 48.0 | 4.34e-01 | 96.9% | 60.2% |
| 2nncA00 | 2.60.40.2470 | Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain | 0.62 | 50.0 | 4.24e-01 | 96.9% | 52.7% |
| 3d6xB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 48.0 | 3.86e-01 | 89.1% | 94.3% |
| 7uzsX01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 51.0 | 4.19e-01 | 98.4% | 76.3% |
| 8owfA01 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 52.0 | 4.42e-01 | 100.0% | 75.7% |
| 3arxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 50.0 | 4.37e-01 | 100.0% | 70.3% |
| 7p0eA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 50.0 | 4.46e-01 | 100.0% | 70.7% |
| 2f68X01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 49.0 | 3.95e-01 | 100.0% | 71.0% |
| 3wnkA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 47.0 | 3.94e-01 | 100.0% | 84.0% |
| 3q2wA05 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 44.0 | 3.96e-01 | 100.0% | 63.0% |
| 1o75A03 | 2.60.40.1300 | Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain C | 0.52 | 43.0 | 3.58e-01 | 100.0% | 68.8% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 38.0 | 2.84e-01 | 92.2% | 27.8% |
| 3fh1A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.04e-01 | 92.2% | 41.0% |
| 2ztbA02 | 2.60.40.4280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.74e-01 | 100.0% | 64.6% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4980384 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.78 | 61.0 | 5.46e-01 | 100.0% | 61.1% |
| 5019374 | 11.1.1.246 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 | 0.77 | 59.0 | 5.28e-01 | 100.0% | 58.9% |
| 5070716 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.76 | 58.0 | 5.17e-01 | 100.0% | 58.9% |
| 5067607 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.75 | 57.0 | 5.08e-01 | 100.0% | 57.8% |
| 5068603 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.75 | 57.0 | 5.23e-01 | 100.0% | 62.4% |
| 4947654 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 62.0 | 5.45e-01 | 100.0% | 62.1% |
| 5035002 | 11.1.1.15 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD | 0.74 | 60.0 | 5.41e-01 | 100.0% | 64.4% |
| 4970564 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 62.0 | 5.14e-01 | 100.0% | 53.6% |
| 5054013 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 62.0 | 5.45e-01 | 100.0% | 64.2% |
| 5010851 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 64.0 | 5.54e-01 | 100.0% | 65.0% |
| 5022900 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 63.0 | 5.61e-01 | 100.0% | 76.8% |
| 4937647 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 61.0 | 5.42e-01 | 100.0% | 66.3% |
| 5067904 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.71 | 53.0 | 4.86e-01 | 100.0% | 61.2% |
| 5067903 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.71 | 51.0 | 4.71e-01 | 100.0% | 58.8% |
| 4947653 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 57.0 | 5.04e-01 | 100.0% | 62.1% |
| 4978199 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 55.0 | 4.82e-01 | 96.9% | 58.0% |
| 3884629 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 58.0 | 5.04e-01 | 100.0% | 62.9% |
| 5041033 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 53.0 | 4.84e-01 | 96.9% | 63.3% |
| 4999319 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 58.0 | 4.09e-01 | 100.0% | 31.4% |
| 5001416 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 51.0 | 4.70e-01 | 96.9% | 62.2% |
| 4873483 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.66 | 32.0 | 4.19e-01 | 95.3% | 93.3% |
| 5060413 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 56.0 | 5.10e-01 | 100.0% | 75.6% |
| 3734524 | 11.14.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 | 0.65 | 56.0 | 4.83e-01 | 98.4% | 61.9% |
| 3996793 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 50.0 | 5.15e-01 | 100.0% | 93.3% |
| 5068493 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 48.0 | 4.37e-01 | 100.0% | 60.0% |
| 4970562 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 51.0 | 4.58e-01 | 96.9% | 65.0% |
| 3255086 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 53.0 | 4.71e-01 | 100.0% | 64.0% |
| 3454333 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 53.0 | 4.74e-01 | 100.0% | 77.9% |
| 5060000 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 50.0 | 4.58e-01 | 100.0% | 66.7% |
| 4935045 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.61 | 52.0 | 4.12e-01 | 100.0% | 51.7% |
| 3249349 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 47.0 | 4.28e-01 | 100.0% | 64.4% |
| 3515862 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 46.0 | 4.15e-01 | 96.9% | 61.1% |
| 280615 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.57 | 48.0 | 3.63e-01 | 100.0% | 41.4% |
| 4970027 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 3.89e-01 | 100.0% | 56.0% |
| 4943898 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.15e-01 | 100.0% | 89.4% |
| 3401058 | 11.1.1.590 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig15 | 0.52 | 44.0 | 3.85e-01 | 100.0% | 67.6% |
| 3575411 | 11.1.1.590 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig15 | 0.52 | 44.0 | 3.88e-01 | 100.0% | 69.0% |