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SRR1747065_scaffold_28_prodigal-single.1__X__X__00176

Bact-Vir

SRR1747065_scaffold_28_prodigal-single.1__X__X__00176

Identity

Kingdom:
phage

Quality

82.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.74 60.0 6.22e-01 92.2% 93.3%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.70 49.0 5.31e-01 75.0% 92.5%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 49.0 3.79e-01 75.0% 45.7%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.69 43.0 3.58e-01 78.1% 35.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 59.0 5.62e-01 98.4% 85.5%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.66 46.0 3.97e-01 73.4% 100.0%
2e1qC01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.66 40.0 3.57e-01 75.0% 42.4%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 45.0 4.46e-01 71.9% 100.0%
1ywhC03 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.65 50.0 4.51e-01 96.9% 60.2%
6usmB01 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 52.0 4.10e-01 96.9% 94.6%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 45.0 3.18e-01 76.6% 28.4%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.62 45.0 4.46e-01 76.6% 77.3%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 42.0 3.13e-01 79.7% 27.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 45.0 3.35e-01 78.1% 31.7%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.62 38.0 3.91e-01 75.0% 63.5%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.61 44.0 3.89e-01 78.1% 73.0%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.61 51.0 4.65e-01 98.4% 83.7%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 41.0 3.57e-01 90.6% 43.4%
2vd3A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 50.0 4.79e-01 90.6% 100.0%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 43.0 3.26e-01 76.6% 58.3%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 3.54e-01 92.2% 42.9%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 34.0 3.32e-01 100.0% 50.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 43.0 3.83e-01 78.1% 56.4%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 44.0 3.72e-01 82.8% 75.0%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.59 44.0 3.67e-01 90.6% 45.3%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.59 40.0 3.86e-01 73.4% 70.1%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 48.0 4.19e-01 93.8% 93.1%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 4.10e-01 93.8% 90.5%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.10e-01 92.2% 59.4%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.58 46.0 4.46e-01 90.6% 97.3%
1vioA03 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.58 46.0 4.32e-01 90.6% 96.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 41.0 3.72e-01 78.1% 56.5%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.68e-01 90.6% 51.5%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 41.0 3.68e-01 76.6% 56.0%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 45.0 3.81e-01 89.1% 64.9%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 42.0 2.73e-01 79.7% 26.7%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.56 47.0 3.93e-01 96.9% 69.2%
6spbZ00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.56 38.0 3.97e-01 71.9% 100.0%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.59e-01 96.9% 41.1%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.55 46.0 3.69e-01 100.0% 44.8%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 44.0 3.41e-01 90.6% 65.2%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 40.0 3.35e-01 79.7% 51.3%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.63e-01 84.4% 54.1%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 42.0 2.77e-01 92.2% 55.5%
2pbzA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 39.0 2.97e-01 81.2% 69.9%
1tdjA03 3.40.1020.10 Alpha Beta › 3-Layer(aba) Sandwich › Biosynthetic Threonine Deaminase; domain 3 › Biosynthetic Threonine Deaminase; Domain 3 0.52 43.0 3.32e-01 96.9% 84.5%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 36.0 2.96e-01 75.0% 74.6%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.51 41.0 3.16e-01 90.6% 46.2%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.51 35.0 2.97e-01 76.6% 40.5%
1rm6A01 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 40.0 3.43e-01 93.8% 68.1%
1vw4X00 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.51 34.0 3.41e-01 70.3% 76.6%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 36.0 2.83e-01 76.6% 44.9%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.50 36.0 3.94e-01 76.6% 100.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.86 57.0 6.65e-01 73.4% 97.8%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.85 58.0 6.74e-01 75.0% 100.0%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.84 57.0 6.63e-01 75.0% 100.0%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.84 58.0 6.44e-01 85.9% 92.0%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.84 58.0 6.42e-01 85.9% 92.0%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.79 59.0 5.95e-01 78.1% 95.2%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.79 56.0 5.84e-01 73.4% 98.3%
4995672 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.79 55.0 6.12e-01 75.0% 94.0%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.79 57.0 6.33e-01 90.6% 98.0%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.78 55.0 5.19e-01 75.0% 65.8%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 59.0 6.11e-01 79.7% 94.9%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.76 61.0 5.98e-01 87.5% 87.1%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 56.0 5.93e-01 78.1% 96.4%
3942988 4187.2.1.1 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.73 49.0 4.93e-01 73.4% 69.2%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 59.0 5.67e-01 92.2% 81.3%
4016088 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.70 61.0 5.20e-01 98.4% 60.0%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 50.0 5.47e-01 78.1% 100.0%
4996322 821.1.1.14 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.68 52.0 4.47e-01 96.9% 51.4%
4642338 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.67 47.0 5.10e-01 73.4% 98.1%
4030871 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.67 58.0 5.65e-01 96.9% 85.7%
3480696 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.67 47.0 4.31e-01 92.2% 56.5%
4886584 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.66 58.0 5.65e-01 98.4% 87.1%
3067246 3115.3.1.1 a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.66 47.0 5.00e-01 76.6% 89.3%
3399490 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.65 46.0 4.65e-01 75.0% 73.8%
3276865 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.64 46.0 4.05e-01 78.1% 52.0%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.64 54.0 4.21e-01 95.3% 61.8%
2794904 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.64 48.0 4.78e-01 81.2% 98.5%
3775035 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 3.87e-01 90.6% 47.0%
4958689 821.1.1.14 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.63 47.0 4.88e-01 96.9% 88.3%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.62 51.0 3.99e-01 92.2% 61.4%
3958897 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.62 54.0 4.45e-01 100.0% 60.8%
4950570 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.62 44.0 4.47e-01 76.6% 92.3%
3389034 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 41.0 4.31e-01 75.0% 80.0%
3726900 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.62 47.0 4.00e-01 84.4% 61.8%
3929359 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 51.0 4.32e-01 92.2% 81.7%
3504586 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.62 53.0 4.08e-01 100.0% 56.1%
3742881 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.61 50.0 4.03e-01 90.6% 48.8%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 44.0 4.21e-01 78.1% 65.3%
4943252 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.61 52.0 4.10e-01 100.0% 63.4%
5027350 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.61 52.0 4.18e-01 100.0% 64.5%
5047232 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 51.0 4.48e-01 95.3% 79.0%
3935205 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 49.0 4.08e-01 92.2% 74.2%
4654074 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.60 52.0 4.71e-01 98.4% 87.8%
4028488 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.60 41.0 3.24e-01 78.1% 32.9%
3400735 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.60 40.0 4.21e-01 96.9% 81.8%
3766042 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.60 42.0 3.54e-01 75.0% 67.3%
3256398 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 3.93e-01 90.6% 55.8%
146929 3115.3.1.1 a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.59 41.0 4.23e-01 78.1% 85.7%
5061487 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 52.0 4.06e-01 100.0% 65.2%
5034902 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.58 50.0 3.95e-01 100.0% 64.8%
3599827 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 3.36e-01 84.4% 44.7%
3594101 301.1.1.0 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.58 47.0 3.67e-01 100.0% 38.7%
4654177 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.57 48.0 3.32e-01 100.0% 70.6%
5015298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 39.0 4.18e-01 84.4% 92.0%
3262497 11.1.1.801 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 0.55 43.0 3.35e-01 84.4% 43.0%
3413652 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.55 39.0 4.01e-01 85.9% 80.0%
4927303 525.1.1.1 a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.55 39.0 3.29e-01 78.1% 88.3%
4077183 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.55 44.0 4.32e-01 90.6% 98.6%
3615237 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.54 39.0 2.54e-01 79.7% 17.5%
5011866 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.53 43.0 3.08e-01 96.9% 40.4%
3622256 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 37.0 2.90e-01 76.6% 35.5%
6786 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.52 41.0 3.48e-01 95.3% 50.4%
3574971 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 37.0 4.05e-01 90.6% 98.0%
4873862 866.1.1.1 a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › FliM 0.51 41.0 3.30e-01 98.4% 60.7%