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SRR1747065_scaffold_312_prodigal-single.1__X__X__00010

Bact-Vir

SRR1747065_scaffold_312_prodigal-single.1__X__X__00010

Identity

Kingdom:
phage

Quality

83.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-137
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ncyB01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 51.0 5.30e-01 94.5% 82.6%
4d3pA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 53.0 5.07e-01 94.5% 76.2%
2esbA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 52.0 4.83e-01 94.5% 69.1%
2g6zA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 52.0 4.97e-01 95.3% 76.2%
2qniA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.63 55.0 4.86e-01 96.1% 98.4%
1ywfA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 57.0 4.60e-01 100.0% 90.5%
1fpzC00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 54.0 4.81e-01 94.5% 74.7%
7q1bA01 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.61 51.0 3.69e-01 92.2% 54.0%
4r30A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 53.0 4.70e-01 94.5% 74.9%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 52.0 4.88e-01 95.3% 96.8%
3imkA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 4.53e-01 88.3% 94.3%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 46.0 4.46e-01 86.7% 99.3%
4ydsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 48.0 4.07e-01 99.2% 79.2%
4c7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 49.0 4.29e-01 99.2% 86.1%
2j5vB01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.55 49.0 4.06e-01 100.0% 89.6%
2i09A01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.55 48.0 3.81e-01 100.0% 96.8%
2f6rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 49.0 4.05e-01 100.0% 74.3%
1ujcA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 46.0 4.38e-01 96.1% 95.5%
1t9hA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 4.29e-01 90.6% 92.5%
8db3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 4.04e-01 99.2% 79.8%
5awhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 46.0 4.11e-01 94.5% 92.2%
6j19A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.76e-01 100.0% 75.5%
7nadx01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.79e-01 98.4% 83.8%
1kfwA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 44.0 3.22e-01 99.2% 98.4%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4980726 2007.2.5.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › DUF488-N3a 0.76 62.0 6.54e-01 90.6% 96.5%
5018591 2007.2.3.15 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 0.74 65.0 5.95e-01 93.8% 84.2%
5003310 7550.1.1.4 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF488 0.72 65.0 6.45e-01 96.9% 99.3%
5010726 2007.2.3.15 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 0.72 67.0 6.10e-01 100.0% 94.5%
3290348 2007.2.3.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase3 0.69 60.0 4.76e-01 93.8% 58.8%
4553010 2007.2.5.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase 0.69 59.0 5.76e-01 94.5% 84.3%
4072711 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.69 58.0 5.70e-01 93.8% 84.3%
5025533 7550.1.1.1 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.67 51.0 5.52e-01 96.1% 97.1%
3334827 7579.1.1.58 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 0.65 54.0 4.02e-01 88.3% 79.4%
3901404 2007.2.3.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.64 56.0 5.05e-01 98.4% 70.5%
4965560 7550.1.1.2 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TraB_PrgY_gumN 0.63 53.0 4.87e-01 91.4% 90.3%
4987660 4244.1.1.0 ↗ a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like 0.62 51.0 4.51e-01 89.8% 85.1%
5021540 7550.1.1.0 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain 0.61 45.0 4.90e-01 96.1% 98.0%
5064886 2004.1.1.210 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ERCC3_RAD25_C 0.60 54.0 5.09e-01 96.1% 98.0%
5059472 4244.1.1.5 ↗ a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › TraB_PrgY_gumN 0.60 52.0 4.68e-01 96.9% 98.4%
3969980 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 53.0 4.46e-01 97.7% 81.4%
3213642 7572.1.1.1 ↗ a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PFK 0.57 46.0 4.68e-01 91.4% 88.0%
4941601 2004.1.1.1219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7504 0.55 49.0 4.38e-01 100.0% 90.3%
5028361 2004.1.1.1219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7504 0.55 50.0 4.35e-01 99.2% 85.3%
5070821 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.55 49.0 4.15e-01 100.0% 80.0%
159321 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.54 49.0 4.05e-01 100.0% 74.3%
5069956 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 48.0 3.88e-01 100.0% 70.8%
4969265 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 4.16e-01 96.9% 87.9%
4000457 2007.2.3.20 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Myotub-related+3-PAP 0.54 46.0 3.36e-01 96.1% 54.4%
4986366 2004.1.1.1219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7504 0.54 48.0 4.30e-01 100.0% 88.6%
3743948 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.54 49.0 4.06e-01 99.2% 76.8%
4166882 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.53 48.0 4.12e-01 100.0% 82.4%
3824892 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.53 47.0 3.68e-01 98.4% 63.2%
3999609 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.53 47.0 3.68e-01 98.4% 72.1%
3603378 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 3.96e-01 89.1% 94.1%
3402807 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.50 37.0 3.53e-01 78.1% 76.1%
D2 high residues 157-221
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o70B00 1.10.3330.10 Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase 0.73 59.0 4.30e-01 86.2% 89.0%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.72 44.0 5.07e-01 92.3% 83.7%
4uavA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 53.0 4.87e-01 100.0% 63.5%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.67 56.0 4.11e-01 95.4% 71.6%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.65 50.0 3.77e-01 86.2% 96.4%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 52.0 3.94e-01 87.7% 96.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.64 46.0 4.18e-01 95.4% 57.6%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.64 47.0 4.51e-01 81.5% 75.6%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 43.0 4.54e-01 95.4% 81.0%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 3.92e-01 100.0% 90.2%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.57 51.0 4.11e-01 100.0% 52.9%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 43.0 4.37e-01 95.4% 82.8%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.56 48.0 3.89e-01 95.4% 92.9%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 41.0 3.28e-01 95.4% 39.7%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.55 50.0 4.12e-01 100.0% 69.9%
2pyqA00 1.10.238.120 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Jann4075-like 0.54 39.0 3.30e-01 89.2% 43.0%
3g7uA02 3.90.120.10 Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 0.53 38.0 2.95e-01 78.5% 97.0%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.53 39.0 3.65e-01 89.2% 60.7%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.53 42.0 3.19e-01 87.7% 81.2%
3gzfD00 1.10.150.420 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus 0.51 43.0 3.81e-01 90.8% 86.8%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 42.0 4.08e-01 90.8% 91.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273440 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.76 63.0 5.35e-01 90.8% 70.5%
3620869 101.1.9.106 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ion_trans 0.73 46.0 4.05e-01 93.8% 44.2%
4963412 101.1.2.938 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25947 0.63 51.0 4.66e-01 92.3% 67.1%
3866299 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.63 44.0 4.53e-01 86.2% 80.0%
3505813 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.59 41.0 4.23e-01 86.2% 80.0%
4929363 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 46.0 3.78e-01 95.4% 47.0%
4946898 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.58 44.0 4.20e-01 95.4% 69.3%
3610579 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.58 46.0 4.09e-01 100.0% 61.1%
3215505 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.57 51.0 3.62e-01 98.5% 93.5%
3209 4201.1.1.1 ↗ alpha arrays › Jann4075-like › Jann4075-like › Jann4075-like › DUF2853 0.54 39.0 3.31e-01 89.2% 43.4%
3198443 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 2.57e-01 100.0% 30.6%
3506109 4163.1.2.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 0.53 47.0 3.76e-01 100.0% 51.7%
3188064 605.1.1.133 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › OST3_OST6 0.52 47.0 3.78e-01 100.0% 82.4%
3698165 192.15.1.77 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 0.52 47.0 3.85e-01 100.0% 89.6%
3990094 5086.1.1.94 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD 0.52 44.0 3.23e-01 92.3% 47.1%